flowPlots: flowPlots: analysis plots and data class for gated flow cytometry data

Graphical displays with embedded statistical tests for gated ICS flow cytometry data, and a data class which stores "stacked" data and has methods for computing summary measures on stacked data, such as marginal and polyfunctional degree data.

AuthorN. Hawkins, S. Self
Date of publicationNone
MaintainerN. Hawkins <hawkins@fhcrc.org>
LicenseArtistic-2.0
Version1.22.0

View on Bioconductor

Man pages

adultsNeonates: The adultsNeonates example data set of "stacked" data.

computeMarginalData-methods: Method computeMarginalData from Class "StackedData"

computeMarkers-methods: Method computeMarkers from Class "StackedData"

computePFDData-methods: Method computePFDData from Class "StackedData"

computePFDGroupStatsList: Compute Group Stats on PFD Data to Be Used In a Legend

computePFDPartsData-methods: Method computePFDPartsData from Class "StackedData"

computeProfileData-methods: Method computeProfileData from Class "StackedData"

GroupListBoxplot: A Boxplot Function With Embedded Statistical Tests for...

legendPFDStatsGroupNames: Create Group Names With Embedded Stats to Use in a Plot...

makeBarplotData: Prepare Profile Data for a Call to Barplot()

makeDataList: Prepare Data in a Data Frame for a Call to GroupListBoxplot()

makeTernaryData: Prepare PFD Data for a Call to ternaryplot()

marginalData-methods: Method marginalData from Class "StackedData"

marginalDF: An example of marginalData

markerMatrix: An example of the markers data.

markers-methods: Method markers from Class "StackedData"

pfdData-methods: Method pfdData from Class "StackedData"

pfdDF: An example of pfdData

pfdPartsData-methods: Method pfdPartsData from Class "StackedData"

pfdPartsList: An example of pfdPartsData

profileData-methods: Method profileData from Class "StackedData"

profileDF: An example of profileData

readStackedData-methods: Method readStackedData from Class "StackedData"

StackedData-class: Class "StackedData"

stackedData-methods: Method stackedData from Class "StackedData"

Files in this package

flowPlots/DESCRIPTION
flowPlots/INDEX
flowPlots/NAMESPACE
flowPlots/R
flowPlots/R/class.StackedData.HelperFcns.R flowPlots/R/class.StackedData.R flowPlots/R/pkg.GroupListBoxplot.R flowPlots/R/pkg.HelperFcns.R flowPlots/R/pkg.HelperPlotFcns.R
flowPlots/build
flowPlots/build/vignette.rds
flowPlots/data
flowPlots/data/adultsNeonates.rda
flowPlots/data/marginalDF.rda
flowPlots/data/markerMatrix.rda
flowPlots/data/pfdDF.rda
flowPlots/data/pfdPartsList.rda
flowPlots/data/profileDF.rda
flowPlots/inst
flowPlots/inst/doc
flowPlots/inst/doc/flowPlots.R
flowPlots/inst/doc/flowPlots.Rnw
flowPlots/inst/doc/flowPlots.pdf
flowPlots/inst/extdata
flowPlots/inst/extdata/adultsNeonates.csv
flowPlots/man
flowPlots/man/GroupListBoxplot.Rd flowPlots/man/StackedData-class.Rd flowPlots/man/adultsNeonates.Rd flowPlots/man/computeMarginalData-methods.Rd flowPlots/man/computeMarkers-methods.Rd flowPlots/man/computePFDData-methods.Rd flowPlots/man/computePFDGroupStatsList.Rd flowPlots/man/computePFDPartsData-methods.Rd flowPlots/man/computeProfileData-methods.Rd flowPlots/man/legendPFDStatsGroupNames.Rd flowPlots/man/makeBarplotData.Rd flowPlots/man/makeDataList.Rd flowPlots/man/makeTernaryData.Rd flowPlots/man/marginalDF.Rd flowPlots/man/marginalData-methods.Rd flowPlots/man/markerMatrix.Rd flowPlots/man/markers-methods.Rd flowPlots/man/pfdDF.Rd flowPlots/man/pfdData-methods.Rd flowPlots/man/pfdPartsData-methods.Rd flowPlots/man/pfdPartsList.Rd flowPlots/man/profileDF.Rd flowPlots/man/profileData-methods.Rd flowPlots/man/readStackedData-methods.Rd flowPlots/man/stackedData-methods.Rd
flowPlots/vignettes
flowPlots/vignettes/flowPlots.Rnw
flowPlots/vignettes/theRefs.bib

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