flowPlots: flowPlots: analysis plots and data class for gated flow cytometry data

Graphical displays with embedded statistical tests for gated ICS flow cytometry data, and a data class which stores "stacked" data and has methods for computing summary measures on stacked data, such as marginal and polyfunctional degree data.

Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("flowPlots")
AuthorN. Hawkins, S. Self
Bioconductor views CellBasedAssays DataRepresentation FlowCytometry Visualization
Date of publicationNone
MaintainerN. Hawkins <hawkins@fhcrc.org>
LicenseArtistic-2.0
Version1.22.0

View on Bioconductor

Man pages

adultsNeonates: The adultsNeonates example data set of "stacked" data.

computeMarginalData-methods: Method computeMarginalData from Class "StackedData"

computeMarkers-methods: Method computeMarkers from Class "StackedData"

computePFDData-methods: Method computePFDData from Class "StackedData"

computePFDGroupStatsList: Compute Group Stats on PFD Data to Be Used In a Legend

computePFDPartsData-methods: Method computePFDPartsData from Class "StackedData"

computeProfileData-methods: Method computeProfileData from Class "StackedData"

GroupListBoxplot: A Boxplot Function With Embedded Statistical Tests for...

legendPFDStatsGroupNames: Create Group Names With Embedded Stats to Use in a Plot...

makeBarplotData: Prepare Profile Data for a Call to Barplot()

makeDataList: Prepare Data in a Data Frame for a Call to GroupListBoxplot()

makeTernaryData: Prepare PFD Data for a Call to ternaryplot()

marginalData-methods: Method marginalData from Class "StackedData"

marginalDF: An example of marginalData

markerMatrix: An example of the markers data.

markers-methods: Method markers from Class "StackedData"

pfdData-methods: Method pfdData from Class "StackedData"

pfdDF: An example of pfdData

pfdPartsData-methods: Method pfdPartsData from Class "StackedData"

pfdPartsList: An example of pfdPartsData

profileData-methods: Method profileData from Class "StackedData"

profileDF: An example of profileData

readStackedData-methods: Method readStackedData from Class "StackedData"

StackedData-class: Class "StackedData"

stackedData-methods: Method stackedData from Class "StackedData"

Functions

adultsNeonates Man page
computeMarginalData Man page
computeMarginalData-methods Man page
computeMarginalData,StackedData,character,character,character,ch Man page
computeMarkers Man page
computeMarkers,character,logical-method Man page
computeMarkers-methods Man page
computePFDData Man page
computePFDData-methods Man page
computePFDData,StackedData,character,character,character,charact Man page
computePFDGroupStatsList Man page
computePFDPartsData Man page
computePFDPartsData-methods Man page
computePFDPartsData,StackedData,character,character,character,ch Man page
computeProfileData Man page
computeProfileData-methods Man page
computeProfileData,StackedData,character,character,character,cha Man page
GroupListBoxplot Man page
legendPFDStatsGroupNames Man page
makeBarplotData Man page
makeDataList Man page
makeTernaryData Man page
marginalData Man page
marginalData<- Man page
marginalData<--methods Man page
marginalData-methods Man page
marginalData<-,StackedData-method Man page
marginalData,StackedData-method Man page
marginalDF Man page
markerMatrix Man page
markers Man page
markers<- Man page
markers<--methods Man page
markers-methods Man page
markers<-,StackedData-method Man page
markers,StackedData-method Man page
pfdData Man page
pfdData<- Man page
pfdData<--methods Man page
pfdData-methods Man page
pfdData<-,StackedData-method Man page
pfdData,StackedData-method Man page
pfdDF Man page
pfdPartsData Man page
pfdPartsData<- Man page
pfdPartsData<--methods Man page
pfdPartsData-methods Man page
pfdPartsData<-,StackedData-method Man page
pfdPartsData,StackedData-method Man page
pfdPartsList Man page
profileData Man page
profileData<- Man page
profileData<--methods Man page
profileData-methods Man page
profileData<-,StackedData-method Man page
profileData,StackedData-method Man page
profileDF Man page
readStackedData Man page
readStackedData,character-method Man page
stackedData Man page
stackedData<- Man page
StackedData Man page
StackedData-class Man page
stackedData<--methods Man page
stackedData-methods Man page
stackedData<-,StackedData-method Man page
stackedData,StackedData-method Man page

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.