Sconify: A toolkit for performing KNN-based statistics for flow and mass cytometry data

This package does k-nearest neighbor based statistics and visualizations with flow and mass cytometery data. This gives tSNE maps"fold change" functionality and provides a data quality metric by assessing manifold overlap between fcs files expected to be the same. Other applications using this package include imputation, marker redundancy, and testing the relative information loss of lower dimension embeddings compared to the original manifold.

Package details

AuthorTyler J Burns
Bioconductor views FlowCytometry ImmunoOncology MultipleComparison SingleCell Software Visualization
MaintainerTyler J Burns <[email protected]>
LicenseArtistic-2.0
Version1.4.0
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("Sconify")

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Sconify documentation built on May 6, 2019, 4:13 a.m.