MakeKnnList: Make list of cells by features for each KNN member

In Sconify: A toolkit for performing KNN-based statistics for flow and mass cytometry data

Description

Takes the KNN function output and the cell data, and makes list where each element is a matrix of cells in the KNN and features.

Usage

MakeKnnList(cell.data, nn.matrix)

Arguments

cell.data	tibble of cells by features
nn.matrix	list of 2. First element is cells x 100 nearest neighbor indices. Second element is cells x 100 nearest neighbor distances

Value

a list where each element is the cell number from the original cell.data tibble and a matrix of cells x feautures for its KNN

Examples

ex.knn <- Fnn(wand.combined, input.markers, k = 30)
knn.list <- MakeKnnList(wand.combined, ex.knn)

Sconify documentation built on Nov. 8, 2020, 6:45 p.m.