RunStatistics: Performs a series of statistical tests on the batch of cells...

In Sconify: A toolkit for performing KNN-based statistics for flow and mass cytometry data

Description

This function performs the statistics across the nearest neighborhoods, and is one of the main workhorses within the scone.values function

Usage

RunStatistics(basal, stim, fold = "median", stat.test = "mwu", stim.name)

Arguments

basal	tibble of cells corresponding to the unstimulated condition
stim	a tibble of cells corresponding to the stimulated condition
fold	a string that specifies the use of "median" or "mean" when calculating fold change
stat.test	a string that specifies Mann-Whitney U test (mwu) or T test (t) for q value calculation
stim.name	a string corresponding to the name of the stim being tested compared to basal

Value

result: a named vector corresponding to the results of the "fold change" and mann-whitney u test

Sconify documentation built on Nov. 8, 2020, 6:45 p.m.