ParseMarkers: Parse markers contained in a Sconify-directed marker file

In Sconify: A toolkit for performing KNN-based statistics for flow and mass cytometry data

Description

This occurs after the user has modified the markers.csv file to determine which markers are to be used as input for KNN and which markers are to be used for within-knn comparisons

Usage

ParseMarkers(marker.file)

Arguments

marker.file

modified markers.csv file, now containing two columns. the left column containing KNN input markers, and the right column containing KNN comparison markers

Value

a list of 2 vectors of strings. The first element, labeled "input" is a vector KNN input markers. THe second slemenet, labeled "functional" are the markers to be used in the KNN based comparisons

Examples

file <- system.file("extdata", "markers.csv", package = "Sconify")
ParseMarkers(file)

Sconify documentation built on Nov. 8, 2020, 6:45 p.m.