This occurs after the user has modified the markers.csv file to determine which markers are to be used as input for KNN and which markers are to be used for within-knn comparisons
modified markers.csv file, now containing two columns. the left column containing KNN input markers, and the right column containing KNN comparison markers
a list of 2 vectors of strings. The first element, labeled "input" is a vector KNN input markers. THe second slemenet, labeled "functional" are the markers to be used in the KNN based comparisons
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