Description Usage Arguments Value Examples

Obtain a density estimation derived from the original manifold, avoiding the lossiness of lower dimensional embeddings

1 | ```
GetKnnDe(nn.matrix)
``` |

`nn.matrix` |
A list of 2, where the first is a matrix of nn indices, and the second is a matrix of nn distances |

a vector where each element is the KNN-DE for that given cell, ordered by row number, in the original input matrix of cells x features

1 2 | ```
ex.knn <- Fnn(wand.combined, input.markers, k = 30)
GetKnnDe(ex.knn)
``` |

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