SubsampleAndTsne: Subsample data and run tSNE

Description Usage Arguments Value Examples

View source: R/post.processing.R

Description

A wrapper for Rtsne that takes final SCONE output, and runs tSNE on it after subsampling. This is specifically for SCONE runs that contain large numbers of cells that tSNE would either be too time-consuming or messy for. Regarding the latter, tSNE typically appears less clean in the range of 10^5 cells

Usage

1
SubsampleAndTsne(dat, input, numcells)

Arguments

dat

tibble of original input data, and scone-based additions.

input

the markers used in the original knn computation, which are typically surface markers

numcells

the number of cells to be downsampled to

Value

a subsampled tibble that contains tSNE values

Examples

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Sconify documentation built on Nov. 8, 2020, 6:45 p.m.