flowUtils: Utilities for flow cytometry

Provides utilities for flow cytometry data.

Author
J. Spidlen., N. Gopalakrishnan, F. Hahne, B. Ellis, R. Gentleman, M. Dalphin, N. Le Meur, B. Purcell, W. Jiang
Date of publication
None
Maintainer
Josef Spidlen <jspidlen@bccrc.ca>
License
Artistic-2.0
Version
1.38.0
URLs

View on Bioconductor

Man pages

flowUtil-package
Utilities for flow cytometry data
read.gatingML
Function to parse a Gating-ML XML file into objects in the R...
testGatingMLCompliance
Function to perform all the Gating-ML compliance tests
write.gatingML
Function to write a Gating-ML XML file based on gating and...

Files in this package

flowUtils/DESCRIPTION
flowUtils/NAMESPACE
flowUtils/R
flowUtils/R/AllClasses.R
flowUtils/R/compensation.R
flowUtils/R/gate-methods.R
flowUtils/R/gatingML.R
flowUtils/R/helperFunctions.R
flowUtils/R/parameter-methods.R
flowUtils/R/transforms.R
flowUtils/R/workflow2FlowJo.R
flowUtils/R/writeGatingML.R
flowUtils/R/zzz.R
flowUtils/build
flowUtils/build/vignette.rds
flowUtils/examples
flowUtils/examples/example1.R
flowUtils/examples/example2.R
flowUtils/examples/example3.R
flowUtils/examples/example4.R
flowUtils/inst
flowUtils/inst/RUnitGml2Script_Files
flowUtils/inst/RUnitGml2Script_Files/runit.01.set1.R
flowUtils/inst/RUnitGml2Script_Files/runit.02.set2.R
flowUtils/inst/RUnitGml2Script_Files/runit.03.set3.R
flowUtils/inst/RUnitGml2Script_Files/runit.04.set4.R
flowUtils/inst/RUnitGml2Script_Files/runit.05.set5.R
flowUtils/inst/RUnitGml2Script_Files/runit.writeGatingML2.set1.R
flowUtils/inst/RUnitGml2Script_Files/runit.writeGatingML2.set2.R
flowUtils/inst/RUnitGml2Script_Files/runit.writeGatingML2.set3.R
flowUtils/inst/RUnitGml2Script_Files/runit.writeGatingML2.set4.R
flowUtils/inst/RUnitGml2Script_Files/runit.writeGatingML2.set5.R
flowUtils/inst/RUnitGml2Script_Files/runit.writeGatingML2.set6.R
flowUtils/inst/RUnitScript_Files
flowUtils/inst/RUnitScript_Files/runit.01Rectangular.R
flowUtils/inst/RUnitScript_Files/runit.02CtSRectangular.R
flowUtils/inst/RUnitScript_Files/runit.03LargeRectangular.R
flowUtils/inst/RUnitScript_Files/runit.04PolygonGates.R
flowUtils/inst/RUnitScript_Files/runit.05CtSPolygonGates.R
flowUtils/inst/RUnitScript_Files/runit.06LargePolygons.R
flowUtils/inst/RUnitScript_Files/runit.07ComplicatedPolygons.R
flowUtils/inst/RUnitScript_Files/runit.08Ellipses.R
flowUtils/inst/RUnitScript_Files/runit.09Ellipsoid.R
flowUtils/inst/RUnitScript_Files/runit.10PolytopeGates.R
flowUtils/inst/RUnitScript_Files/runit.11DecisionTrees.R
flowUtils/inst/RUnitScript_Files/runit.12CtSDecisionTreeGates.R
flowUtils/inst/RUnitScript_Files/runit.13LargeDecisionTrees.R
flowUtils/inst/RUnitScript_Files/runit.14BooleanGates.R
flowUtils/inst/RUnitScript_Files/runit.15CtSBooleanGates.R
flowUtils/inst/RUnitScript_Files/runit.16LargeBooleanGates.R
flowUtils/inst/RUnitScript_Files/runit.17ParentIdTest.R
flowUtils/inst/RUnitScript_Files/runit.18ParentIdTest2.R
flowUtils/inst/RUnitScript_Files/runit.19TrCombination.R
flowUtils/inst/RUnitScript_Files/runit.20TrRatio.R
flowUtils/inst/RUnitScript_Files/runit.21TrQuadratic.R
flowUtils/inst/RUnitScript_Files/runit.22TrSqrt.R
flowUtils/inst/RUnitScript_Files/runit.23TrLn.R
flowUtils/inst/RUnitScript_Files/runit.24TrExp.R
flowUtils/inst/RUnitScript_Files/runit.25TrASinH.R
flowUtils/inst/RUnitScript_Files/runit.26TrSinH.R
flowUtils/inst/RUnitScript_Files/runit.27TrHyperlog.R
flowUtils/inst/RUnitScript_Files/runit.28TrEH.R
flowUtils/inst/RUnitScript_Files/runit.29TrSplitScale.R
flowUtils/inst/RUnitScript_Files/runit.30TrInvSplitScale.R
flowUtils/inst/RUnitScript_Files/runit.31TrCompensation.R
flowUtils/inst/RUnitScript_Files/runit.32TrCompensation.R
flowUtils/inst/defaults.xml
flowUtils/inst/doc
flowUtils/inst/doc/HowTo-flowUtils.R
flowUtils/inst/doc/HowTo-flowUtils.Rnw
flowUtils/inst/doc/HowTo-flowUtils.pdf
flowUtils/inst/extdata
flowUtils/inst/extdata/GatingML2.0_Example1.xml
flowUtils/man
flowUtils/man/flowUtil-package.Rd
flowUtils/man/read.gatingML.Rd
flowUtils/man/testGatingMLCompliance.Rd
flowUtils/man/write.gatingML.Rd
flowUtils/vignettes
flowUtils/vignettes/166889.png
flowUtils/vignettes/HowTo-flowUtils.Rnw
flowUtils/vignettes/flowUtilsRefs.bib