flowUtils: Utilities for flow cytometry

Provides utilities for flow cytometry data.

Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("flowUtils")
AuthorJ. Spidlen., N. Gopalakrishnan, F. Hahne, B. Ellis, R. Gentleman, M. Dalphin, N. Le Meur, B. Purcell, W. Jiang
Bioconductor views CellBasedAssays DecisionTree FlowCytometry Infrastructure
Date of publicationNone
MaintainerJosef Spidlen <jspidlen@bccrc.ca>
LicenseArtistic-2.0
Version1.38.0
https://github.com/jspidlen/flowUtils

View on Bioconductor

Files

DESCRIPTION
NAMESPACE
R
R/AllClasses.R R/compensation.R R/gate-methods.R R/gatingML.R R/helperFunctions.R R/parameter-methods.R R/transforms.R R/workflow2FlowJo.R R/writeGatingML.R R/zzz.R
build
build/vignette.rds
examples
examples/example1.R examples/example2.R examples/example3.R examples/example4.R
inst
inst/RUnitGml2Script_Files
inst/RUnitGml2Script_Files/runit.01.set1.R inst/RUnitGml2Script_Files/runit.02.set2.R inst/RUnitGml2Script_Files/runit.03.set3.R inst/RUnitGml2Script_Files/runit.04.set4.R inst/RUnitGml2Script_Files/runit.05.set5.R inst/RUnitGml2Script_Files/runit.writeGatingML2.set1.R inst/RUnitGml2Script_Files/runit.writeGatingML2.set2.R inst/RUnitGml2Script_Files/runit.writeGatingML2.set3.R inst/RUnitGml2Script_Files/runit.writeGatingML2.set4.R inst/RUnitGml2Script_Files/runit.writeGatingML2.set5.R inst/RUnitGml2Script_Files/runit.writeGatingML2.set6.R
inst/RUnitScript_Files
inst/RUnitScript_Files/runit.01Rectangular.R inst/RUnitScript_Files/runit.02CtSRectangular.R inst/RUnitScript_Files/runit.03LargeRectangular.R inst/RUnitScript_Files/runit.04PolygonGates.R inst/RUnitScript_Files/runit.05CtSPolygonGates.R inst/RUnitScript_Files/runit.06LargePolygons.R inst/RUnitScript_Files/runit.07ComplicatedPolygons.R inst/RUnitScript_Files/runit.08Ellipses.R inst/RUnitScript_Files/runit.09Ellipsoid.R inst/RUnitScript_Files/runit.10PolytopeGates.R inst/RUnitScript_Files/runit.11DecisionTrees.R inst/RUnitScript_Files/runit.12CtSDecisionTreeGates.R inst/RUnitScript_Files/runit.13LargeDecisionTrees.R inst/RUnitScript_Files/runit.14BooleanGates.R inst/RUnitScript_Files/runit.15CtSBooleanGates.R inst/RUnitScript_Files/runit.16LargeBooleanGates.R inst/RUnitScript_Files/runit.17ParentIdTest.R inst/RUnitScript_Files/runit.18ParentIdTest2.R inst/RUnitScript_Files/runit.19TrCombination.R inst/RUnitScript_Files/runit.20TrRatio.R inst/RUnitScript_Files/runit.21TrQuadratic.R inst/RUnitScript_Files/runit.22TrSqrt.R inst/RUnitScript_Files/runit.23TrLn.R inst/RUnitScript_Files/runit.24TrExp.R inst/RUnitScript_Files/runit.25TrASinH.R inst/RUnitScript_Files/runit.26TrSinH.R inst/RUnitScript_Files/runit.27TrHyperlog.R inst/RUnitScript_Files/runit.28TrEH.R inst/RUnitScript_Files/runit.29TrSplitScale.R inst/RUnitScript_Files/runit.30TrInvSplitScale.R inst/RUnitScript_Files/runit.31TrCompensation.R inst/RUnitScript_Files/runit.32TrCompensation.R
inst/defaults.xml
inst/doc
inst/doc/HowTo-flowUtils.R
inst/doc/HowTo-flowUtils.Rnw
inst/doc/HowTo-flowUtils.pdf
inst/extdata
inst/extdata/GatingML2.0_Example1.xml
man
man/flowUtil-package.Rd man/read.gatingML.Rd man/testGatingMLCompliance.Rd man/write.gatingML.Rd
vignettes
vignettes/166889.png
vignettes/HowTo-flowUtils.Rnw
vignettes/flowUtilsRefs.bib

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