flowPeaks: An R package for flow data clustering

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A fast and automatic clustering to classify the cells into subpopulations based on finding the peaks from the overall density function generated by K-means.

Author
Yongchao Ge<yongchao.ge@gmail.com>
Date of publication
None
Maintainer
Yongchao Ge<yongchao.ge@gmail.com>
License
Artistic-1.0
Version
1.18.0

View on Bioconductor

Man pages

adjust.flowPeaks
Adjusting the smoothing and merging behavior of the flowPeaks...
assign.flowPeaks
Obtain the flowPeaks cluster lables with the option of...
barcode
The barcode dataset
concave
The concave dataset
evalCluster
evaulate the result of a clustering algorihm by comparing it...
flowPeaks
Doing the flowPeaks analysis
plot.flowPeaks
Plot the results generated by flowPeaks
print.flowPeaks
The display of the flowPeaks results
summary.flowPeaks
The summary of the flowPeaks results

Files in this package

flowPeaks/DESCRIPTION
flowPeaks/NAMESPACE
flowPeaks/R
flowPeaks/R/flowPeaks.R
flowPeaks/README
flowPeaks/build
flowPeaks/build/vignette.rds
flowPeaks/data
flowPeaks/data/barcode.RData
flowPeaks/data/concave.RData
flowPeaks/data/datalist
flowPeaks/inst
flowPeaks/inst/CITATION
flowPeaks/inst/doc
flowPeaks/inst/doc/flowPeaks-guide.R
flowPeaks/inst/doc/flowPeaks-guide.Rnw
flowPeaks/inst/doc/flowPeaks-guide.pdf
flowPeaks/man
flowPeaks/man/adjust.flowPeaks.Rd
flowPeaks/man/assign.flowPeaks.Rd
flowPeaks/man/barcode.Rd
flowPeaks/man/concave.Rd
flowPeaks/man/evalCluster.Rd
flowPeaks/man/flowPeaks.Rd
flowPeaks/man/plot.flowPeaks.Rd
flowPeaks/man/print.flowPeaks.Rd
flowPeaks/man/summary.flowPeaks.Rd
flowPeaks/src
flowPeaks/src/Makevars
flowPeaks/src/Makevars.win
flowPeaks/src/Rpack.cpp
flowPeaks/src/Rregistrate.cpp
flowPeaks/src/VoronoiDiagramGenerator.cpp
flowPeaks/src/VoronoiDiagramGenerator.h
flowPeaks/src/flowPeaks.cpp
flowPeaks/src/flowPeaks.h
flowPeaks/src/func_collect.cpp
flowPeaks/src/func_collect.h
flowPeaks/src/func_collect_supp.cpp
flowPeaks/src/gvector_gmatrix.cpp
flowPeaks/src/gvector_gmatrix.h
flowPeaks/src/kd_tree.cpp
flowPeaks/src/kd_tree.h
flowPeaks/src/kmns.cpp
flowPeaks/src/memory_handle.h
flowPeaks/src/quick_op.h
flowPeaks/tools
flowPeaks/tools/winlibs.R
flowPeaks/vignettes
flowPeaks/vignettes/flowPeaks-guide.Rnw