flowPeaks: An R package for flow data clustering

A fast and automatic clustering to classify the cells into subpopulations based on finding the peaks from the overall density function generated by K-means.

Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("flowPeaks")
AuthorYongchao Ge<yongchao.ge@gmail.com>
Bioconductor views Clustering FlowCytometry Gating
Date of publicationNone
MaintainerYongchao Ge<yongchao.ge@gmail.com>
LicenseArtistic-1.0
Version1.18.0

View on Bioconductor

Files

DESCRIPTION
NAMESPACE
R
R/flowPeaks.R
README
build
build/vignette.rds
data
data/barcode.RData
data/concave.RData
data/datalist
inst
inst/CITATION
inst/doc
inst/doc/flowPeaks-guide.R
inst/doc/flowPeaks-guide.Rnw
inst/doc/flowPeaks-guide.pdf
man
man/adjust.flowPeaks.Rd man/assign.flowPeaks.Rd man/barcode.Rd man/concave.Rd man/evalCluster.Rd man/flowPeaks.Rd man/plot.flowPeaks.Rd man/print.flowPeaks.Rd man/summary.flowPeaks.Rd
src
src/Makevars
src/Makevars.win
src/Rpack.cpp
src/Rregistrate.cpp
src/VoronoiDiagramGenerator.cpp
src/VoronoiDiagramGenerator.h
src/flowPeaks.cpp
src/flowPeaks.h
src/func_collect.cpp
src/func_collect.h
src/func_collect_supp.cpp
src/gvector_gmatrix.cpp
src/gvector_gmatrix.h
src/kd_tree.cpp
src/kd_tree.h
src/kmns.cpp
src/memory_handle.h
src/quick_op.h
tools
tools/winlibs.R
vignettes
vignettes/flowPeaks-guide.Rnw

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.