flowViz: Visualization for flow cytometry

Provides visualization tools for flow cytometry data.

Author
B. Ellis, R. Gentleman, F. Hahne, N. Le Meur, D. Sarkar, M. Jiang
Date of publication
None
Maintainer
Mike Jiang <wjiang2@fhcrc.org>
License
Artistic-2.0
Version
1.38.0

View on Bioconductor

Man pages

addName-methods
Add gate names to a flowViz plot.
contour-methods
Contour plots for flow data
densityplot
One-dimensional density/histogram plots for flow data
ecdfplot
Method implementing Lattice ECDF plots for flow data
flowPlot
Standard Plots for Flow Cytometry Data
flowViz-package
Visualization for flow cytometry
flowViz.par.get
Query and set session-wide graphical parameter defaults.
glines-methods
Drawing filter boundaries
glpoints-methods
Adding points within a gate to a plot
glpolygon-methods
Drawing filter regions
gpoints-methods
Adding points within a gate to a plot
gpolygon-methods
Drawing filter regions
lattice-methods
Methods implementing Lattice displays for flow data
plot
Very basic plotting of flowFrames
splom
Method implementing Lattice scatter plot matrices for flow...
timeLinePlot
Plot channel values against time
xyplot
Methods implementing Lattice xyplots for flow data.

Files in this package

flowViz/DESCRIPTION
flowViz/NAMESPACE
flowViz/R
flowViz/R/AllGenerics.R
flowViz/R/addNames-methods.R
flowViz/R/contour.R
flowViz/R/densityplot.R
flowViz/R/ecdfplot.R
flowViz/R/flowPlot.R
flowViz/R/flowViz-package.R
flowViz/R/gateplotting_utils.R
flowViz/R/histogram.R
flowViz/R/latticeMethods.R
flowViz/R/lines-methods.R
flowViz/R/lpoints-methods.R
flowViz/R/lpolygon-methods.R
flowViz/R/parallel.R
flowViz/R/parallel.rgl.R
flowViz/R/plot-methods.R
flowViz/R/points-methods.R
flowViz/R/polygon-methods.R
flowViz/R/splom.R
flowViz/R/timeLinePlot.R
flowViz/R/utilities.R
flowViz/R/xyplot.R
flowViz/TODO
flowViz/attic
flowViz/attic/tmp.R
flowViz/build
flowViz/build/vignette.rds
flowViz/inst
flowViz/inst/NEWS
flowViz/inst/doc
flowViz/inst/doc/filters.R
flowViz/inst/doc/filters.Rmd
flowViz/inst/doc/filters.html
flowViz/man
flowViz/man/addName-methods.Rd
flowViz/man/contour-methods.Rd
flowViz/man/densityplot.Rd
flowViz/man/ecdfplot.Rd
flowViz/man/flowPlot.Rd
flowViz/man/flowViz-package.Rd
flowViz/man/flowViz.par.get.Rd
flowViz/man/glines-methods.Rd
flowViz/man/glpoints-methods.Rd
flowViz/man/glpolygon-methods.Rd
flowViz/man/gpoints-methods.Rd
flowViz/man/gpolygon-methods.Rd
flowViz/man/lattice-methods.Rd
flowViz/man/plot.Rd
flowViz/man/splom.Rd
flowViz/man/timeLinePlot.Rd
flowViz/man/xyplot.Rd
flowViz/vignettes
flowViz/vignettes/cytoref.bib
flowViz/vignettes/densityplot_vs_histogram.Rmd
flowViz/vignettes/filters.Rmd