addName-methods: Add gate names to a flowViz plot.

In flowViz: Visualization for flow cytometry

Description

These methods add gate names to a flowViz plot, either derived from the population identifiers or as provided by the user. These methods are ment for internal use and are usually not called directly by the user.

Usage

## S4 method for signature 'rectangleGate,character'
addName(x, name, data, gp, pos = 0.5,
  abs = FALSE, xlim, ylim, ...)

Arguments

x	rectangleGate, ellipsoidGate, quadGate, polygonGate or kmeansFilter
name	character or logical or matrix
data	flowFrame
gp	a list of graphical parameters
pos, abs	specifying location of the name. see 'help(xyplot)' for more details
xlim, ylim	limits of axis
...	other arguments

Value

The methods are called for their side effects. No value is returned.

Methods

x = "curv1Filter", name = "character"

User-provided names.

x = "curv1Filter", name = "logical"

Get names from the filter or filterResult object

x = "curv2Filter", name = "character"

see above

x = "curv2Filter", name = "logical"

see above

x = "ellipsoidGate", name = "character"

see above

x = "ellipsoidGate", name = "logical"

see above

x = "kmeansFilter", name = "character"

see above

x = "kmeansFilter", name = "logical"

see above

x = "polygonGate", name = "character"

see above

x = "polygonGate", name = "logical"

see above

x = "quadGate", name = "character"

see above

x = "quadGate", name = "logical"

see above

x = "quadGate", name = "matrix"

see above

x = "rectangleGate", name = "character"

see above

x = "rectangleGate", name = "logical"

see above

Author(s)

F. Hahne

flowViz documentation built on Nov. 8, 2020, 7:53 p.m.