flowPloidy: Analyze flow cytometer data to determine sample ploidy

Determine sample ploidy via flow cytometry histogram analysis. Reads Flow Cytometry Standard (FCS) files via the flowCore bioconductor package, and provides functions for determining the DNA ploidy of samples based on internal standards.

Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("flowPloidy")
AuthorTyler Smith <tyler@plantarum.ca>
Bioconductor views FlowCytometry GUI Regression Visualization
Date of publicationNone
MaintainerTyler Smith <tyler@plantarum.ca>
LicenseGPL-3
Version1.0.0
https://github.com/plantarum/flowPloidy

View on Bioconductor

Files

DESCRIPTION
NAMESPACE
R
R/FlowHist.R R/flowAnalysis.R R/models.R R/shiny.R
README.md
TODO.org
build
build/vignette.rds
inst
inst/NEWS
inst/doc
inst/doc/flowPloidy-overview.R
inst/doc/flowPloidy-overview.Rmd
inst/doc/flowPloidy-overview.html
man
man/FlowHist.Rd man/browseFlowHist.Rd man/fhAnalyze.Rd man/findPeaks.Rd man/gauss.Rd man/pickInit.Rd man/plot.FlowHist.Rd man/plotFH.Rd man/setBins.Rd man/tabulateFlowHist.Rd man/updateFlowHist.Rd man/viewFlowChannels.Rd
vignettes
vignettes/flowPloidy-overview.Rmd
vignettes/flowPloidy.bibtex
vignettes/flowShiny01.png
vignettes/flowShiny02.png
vignettes/flowShiny03.png
vignettes/flowShiny04.png
vignettes/flowShiny05.png
vignettes/flowShiny06.png
vignettes/flowShiny07.png

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.