flowPloidy: Analyze flow cytometer data to determine sample ploidy

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Determine sample ploidy via flow cytometry histogram analysis. Reads Flow Cytometry Standard (FCS) files via the flowCore bioconductor package, and provides functions for determining the DNA ploidy of samples based on internal standards.

Author
Tyler Smith <tyler@plantarum.ca>
Date of publication
None
Maintainer
Tyler Smith <tyler@plantarum.ca>
License
GPL-3
Version
1.0.0
URLs

View on Bioconductor

Man pages

browseFlowHist
browseFlowHist
fhAnalyze
fhAnalyze
findPeaks
findPeaks
FlowHist
FlowHist
gauss
Gaussian model components
pickInit
Interactively select model starting values
plotFH
Plot the raw data for a FlowHist object
plot.FlowHist
Plot histograms for FlowHist objects
setBins
setBins
tabulateFlowHist
exportFlowHist
updateFlowHist
updateFlowHist
viewFlowChannels
viewFlowChannels

Files in this package

flowPloidy/DESCRIPTION
flowPloidy/NAMESPACE
flowPloidy/R
flowPloidy/R/FlowHist.R
flowPloidy/R/flowAnalysis.R
flowPloidy/R/models.R
flowPloidy/R/shiny.R
flowPloidy/README.md
flowPloidy/TODO.org
flowPloidy/build
flowPloidy/build/vignette.rds
flowPloidy/inst
flowPloidy/inst/NEWS
flowPloidy/inst/doc
flowPloidy/inst/doc/flowPloidy-overview.R
flowPloidy/inst/doc/flowPloidy-overview.Rmd
flowPloidy/inst/doc/flowPloidy-overview.html
flowPloidy/man
flowPloidy/man/FlowHist.Rd
flowPloidy/man/browseFlowHist.Rd
flowPloidy/man/fhAnalyze.Rd
flowPloidy/man/findPeaks.Rd
flowPloidy/man/gauss.Rd
flowPloidy/man/pickInit.Rd
flowPloidy/man/plot.FlowHist.Rd
flowPloidy/man/plotFH.Rd
flowPloidy/man/setBins.Rd
flowPloidy/man/tabulateFlowHist.Rd
flowPloidy/man/updateFlowHist.Rd
flowPloidy/man/viewFlowChannels.Rd
flowPloidy/vignettes
flowPloidy/vignettes/flowPloidy-overview.Rmd
flowPloidy/vignettes/flowPloidy.bibtex
flowPloidy/vignettes/flowShiny01.png
flowPloidy/vignettes/flowShiny02.png
flowPloidy/vignettes/flowShiny03.png
flowPloidy/vignettes/flowShiny04.png
flowPloidy/vignettes/flowShiny05.png
flowPloidy/vignettes/flowShiny06.png
flowPloidy/vignettes/flowShiny07.png