fhAccessors: FlowHist Accessors

In flowPloidy: Analyze flow cytometer data to determine sample ploidy

Description

Functions to access slot values in FlowHist objects

Usage

fhGate(fh)

fhLimits(fh)

fhSamples(fh)

fhPeaks(fh)

fhInit(fh)

fhComps(fh)

fhModel(fh)

fhSpecialParams(fh)

fhArgs(fh)

fhNLS(fh)

fhCounts(fh)

fhCV(fh)

fhRCS(fh)

fhFile(fh)

fhChannel(fh)

fhBins(fh)

fhLinearity(fh)

fhDebris(fh)

fhHistData(fh)

fhRaw(fh)

fhStandards(fh)

fhStdPeak(fh)

fhStdSelected(fh)

fhStdSizes(fh)

fhOpts(fh)

fhG2(fh)

fhAnnotation(fh)

fhFail(fh)

Arguments

fh	a FlowHist

Details

For normal users, these functions aren't necessary. Overly curious users, or those wishing to hack on the code, may find these useful for inspecting the various bits and pieces inside a FlowHist object.

The versions of these functions that allow modification of the FlowHist object are not exported. Functions are provided for users to update FlowHist objects in a safe way.

Value

Used to access a slot, returns the value of the slot. Used to update the value of a slot, returns the updated FlowHist object.

Author(s)

Tyler Smith

Examples

library(flowPloidyData) 
fh1 <- FlowHist(file = flowPloidyFiles()[1], channel = "FL3.INT.LIN")
fhModel(fh1) ## prints the model to screen

flowPloidy documentation built on Nov. 8, 2020, 8:04 p.m.