setGate: setGate
In flowPloidy: Analyze flow cytometer data to determine sample ploidy

Description Usage Arguments Details Value Author(s) See Also

Apply a gate to a FlowHist object

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setGate(fh, gate, refresh = TRUE)

isGated(fh)

`fh`	a `FlowHist` object
`gate`	boolean, a vector indicating which rows in the raw data should be included (gated) in the analysis.
`refresh`	boolean, should the analysis be updated after applying the gate (default = TRUE)?

This function is primarily book-keeping to make sure that histData and downstream calculations are appropriately updated when a gate is applied. The code for applying the gate is actually in the function setBins.

setGate returns an updated FlowHist object, with the histData slot updated to account for the gate. With refresh = TRUE (default), it will also rebuild the model and complete the analysis.

isGated returns TRUE if the FlowHist object is gated.

Tyler Smith

setBins

flowPloidy documentation built on Nov. 8, 2020, 8:04 p.m.