updateFlowHist: updateFlowHist
In flowPloidy: Analyze flow cytometer data to determine sample ploidy

Description Usage Arguments Details Value Author(s) Examples

Update, and optionally re-analyze, a FlowHist object

1 2	updateFlowHist(fh, linearity = NULL, debris = NULL, samples = NULL, analyze = TRUE)

`fh`	a `FlowHist` object
`linearity`	character, either "variable", the default, or "fixed". If "fixed", linearity is fixed at 2; if "variable", linearity is fit as a model parameter.
`debris`	character, either "SC", the default, or "MC", to set the debris model component to the Single-Cut or Multi-Cut models.
`samples`	integer, the number of samples in the data
`analyze`	logical, if TRUE the updated model will be analyzed immediately

Allows users to switch the debris model from Single-Cut to Multi-Cut (or vice-versa), or to toggle linearity between fixed and variable.

a FlowHist object with the modified values of linearity and/or debris, and, if analyze was TRUE, a new NLS fitting

Tyler Smith

## defaults to 256 bins:
library(flowPloidyData) 
fh1 <- FlowHist(file = flowPloidyFiles()[1], channel = "FL3.INT.LIN")
## default is Single-Cut, change that to Multi-Cut:
fh1mc <- updateFlowHist(fh1, debris = "MC")
plot(fh1)