cole-trapnell-lab/cicero: Predict cis-co-accessibility from single-cell chromatin accessibility data

Cicero computes putative cis-regulatory maps from single-cell chromatin accessibility data. It also extends monocle 2 for use in chromatin accessibility data.

Getting started

Package details

Bioconductor views ATACSeq CellBasedAssays Clustering Epigenetics GeneRegulation GeneTarget ImmunoOncology Sequencing SingleCell
Maintainer
LicenseMIT + file LICENSE
Version1.13.4
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("cole-trapnell-lab/cicero")
cole-trapnell-lab/cicero documentation built on April 19, 2022, 4:40 a.m.