cicero: Precict cis-co-accessibility from single-cell chromatin accessibility data

Cicero computes putative cis-regulatory maps from single-cell chromatin accessibility data. It also extends monocle 2 for use in chromatin accessibility data.

Package details

AuthorHannah Pliner [aut, cre], Cole Trapnell [aut]
Bioconductor views ATACSeq CellBasedAssays Clustering Epigenetics GeneRegulation GeneTarget ImmunoOncology Sequencing SingleCell
MaintainerHannah Pliner <>
LicenseMIT + file LICENSE
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))


Try the cicero package in your browser

Any scripts or data that you put into this service are public.

cicero documentation built on Dec. 10, 2020, 2 a.m.