cicero
Precict cis-co-accessibility from single-cell chromatin accessibility data

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cicero: Precict cis-co-accessibility from single-cell chromatin accessibility data

cicero: Precict cis-co-accessibility from single-cell chromatin accessibility data

Cicero computes putative cis-regulatory maps from single-cell chromatin accessibility data. It also extends monocle 2 for use in chromatin accessibility data.

Getting started

Package overview README.md Single Cell ATAC-seq Analysis with Cicero

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Package details
AuthorHannah Pliner [aut, cre], Cole Trapnell [aut]
Bioconductor views ATACSeq CellBasedAssays Clustering Epigenetics GeneRegulation GeneTarget ImmunoOncology Sequencing SingleCell
MaintainerHannah Pliner <hpliner@uw.edu>
LicenseMIT + file LICENSE
Version1.8.1
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R: 
if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("cicero")

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cicero documentation built on Dec. 10, 2020, 2 a.m.

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