cicero: Precict cis-co-accessibility from single-cell chromatin accessibility data

Cicero computes putative cis-regulatory maps from single-cell chromatin accessibility data. It also extends monocle 2 for use in chromatin accessibility data.

Package details

AuthorHannah Pliner [aut, cre], Cole Trapnell [aut]
Bioconductor views ATACSeq CellBasedAssays Clustering Epigenetics GeneTarget ImmunoOncology GeneRegulation Sequencing SingleCell
MaintainerHannah Pliner <hpliner@uw.edu>
LicenseMIT + file LICENSE
Version1.6.2
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("cicero")

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cicero documentation built on Sept. 1, 2020, 2:01 a.m.