Description Usage Arguments Details Value Examples

Make a barplot of chromatin accessibility across pseudotime

1 | ```
plot_accessibility_in_pseudotime(cds_subset, breaks = 10)
``` |

`cds_subset` |
Subset of the CDS object you want to plot. The CDS must have a column in the pData table called "Pseudotime". |

`breaks` |
Number of breaks along pseudotime. Controls the coarseness of the plot. |

This function plots each site in the CDS subset by cell pseudotime
as a barplot. Cells are divided into bins by pseudotime (number determined
by `breaks`

) and the percent of cells in each bin that are accessible
is represented by bar height. In addition, the black line represents the
pseudotime-dependent average accessibility from a smoothed binomial
regression.

ggplot object

1 2 3 4 5 6 | ```
## Not run:
plot_accessibility_in_pseudotime(input_cds_lin[c("chr18_38156577_38158261",
"chr18_48373358_48374180",
"chr18_60457956_60459080")])
## End(Not run)
``` |

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