Make a barplot of chromatin accessibility across pseudotime
plot_accessibility_in_pseudotime(cds_subset, breaks = 10)
Subset of the CDS object you want to plot. The CDS must have a column in the pData table called "Pseudotime".
Number of breaks along pseudotime. Controls the coarseness of the plot.
This function plots each site in the CDS subset by cell pseudotime
as a barplot. Cells are divided into bins by pseudotime (number determined
breaks) and the percent of cells in each bin that are accessible
is represented by bar height. In addition, the black line represents the
pseudotime-dependent average accessibility from a smoothed binomial
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