aggregate_by_cell_bin: Aggregate count CDS by groups of cells
In cicero: Precict cis-co-accessibility from single-cell chromatin accessibility data
Description
Usage
Arguments
Details
Value
Examples
Description
Aggregates a CDS based on an indicator column in the pData table
Usage
1
aggregate_by_cell_bin(cds, group_col)
Arguments
cds
A CDS object to be aggregated
group_col
The name of the column in the pData table that
indicates the cells assignment to its aggregate bin.
Details
This function takes an input CDS object and collapses cells based
on a column in the pData table by summing the values within the
cell group.
Value
A count cds aggregated by group_col
Examples
1
2
3
4
data("cicero_data")
#input_cds <- make_atac_cds(cicero_data, binarize = TRUE)
#pData(input_cds)$cell_subtype <- rep(1:10, times=20)
#binned_input_lin <-aggregate_by_cell_bin(input_cds, "cell_subtype")
cicero documentation built on Dec. 10, 2020, 2 a.m.
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Description Usage Arguments Details Value Examples
Description
Aggregates a CDS based on an indicator column in the pData table
Usage
1 | aggregate_by_cell_bin(cds, group_col)
|
Arguments
cds |
A CDS object to be aggregated |
group_col |
The name of the column in the |
Details
This function takes an input CDS object and collapses cells based
on a column in the pData table by summing the values within the
cell group.
Value
A count cds aggregated by group_col
Examples
1 2 3 4 | data("cicero_data")
#input_cds <- make_atac_cds(cicero_data, binarize = TRUE)
#pData(input_cds)$cell_subtype <- rep(1:10, times=20)
#binned_input_lin <-aggregate_by_cell_bin(input_cds, "cell_subtype")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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