contiBAIT: Improves Early Build Genome Assemblies using Strand-Seq Data

Using strand inheritance data from multiple single cells from the organism whose genome is to be assembled, contiBAIT can cluster unbridged contigs together into putative chromosomes, and order the contigs within those chromosomes.

Package details

AuthorKieran O'Neill, Mark Hills, Mike Gottlieb
Bioconductor views CellBasedAssays Genetics GenomeAssembly ImmunoOncology QualityControl WholeGenome
MaintainerKieran O'Neill <>
LicenseBSD_2_clause + file LICENSE
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))


Try the contiBAIT package in your browser

Any scripts or data that you put into this service are public.

contiBAIT documentation built on Nov. 8, 2020, 5:49 p.m.