orderContigsTSP: Attempt to order contigs within linkage groups using...
In contiBAIT: Improves Early Build Genome Assemblies using Strand-Seq Data
Description
Usage
Arguments
Value
View source: R/orderContigsTSP.R
Description
Attempt to order contigs within linkage groups using travelling salesperson algorithm
Usage
1
orderContigsTSP(linkageGroupReadTable, reps)
Arguments
linkageGroupReadTable
dataframe of strand calls (product of combineZeroDists or preprocessStrandTable)
reps
Number of repetitions for he 2-opt TSP solver algorithm
Value
list of two members: 1) contig names in order, 2) the original data.frame entered into function correctly ordered
contiBAIT documentation built on Nov. 8, 2020, 5:49 p.m.
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Description Usage Arguments Value
View source: R/orderContigsTSP.R
Description
Attempt to order contigs within linkage groups using travelling salesperson algorithm
Usage
1 | orderContigsTSP(linkageGroupReadTable, reps)
|
Arguments
linkageGroupReadTable |
dataframe of strand calls (product of combineZeroDists or preprocessStrandTable) |
reps |
Number of repetitions for he 2-opt TSP solver algorithm |
Value
list of two members: 1) contig names in order, 2) the original data.frame entered into function correctly ordered
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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