plotContigOrder: Plot ordering of contigs within a single linkage group.

Description Usage Arguments Value Examples

Description

Plot ordering of contigs within a single linkage group.

Usage

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## S4 method for signature 'ContigOrdering'
plotContigOrder(contigOrder, lg = "all",
  verbose = TRUE)

Arguments

contigOrder

matrix from orderAllContigs with the subdivided linkage groups and the names of the contigs to plot

lg

Integer specifying the linkage group by which to plot. Default is all

verbose

prints messages to the terminal (default is TRUE)

Value

A ggplot object (which will be plotted automatically if not assigned).

Examples

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#Get a data.frame of ordered contigs from cells from the same organism, aligned to the same genome
 
data("exampleContigOrder")

plotContigOrder(exampleContigOrder[[1]], lg=1)

contiBAIT documentation built on May 31, 2017, 2:44 p.m.