Description Usage Arguments Value Examples
Plot ordering of contigs within a single linkage group.
1 2 3 | ## S4 method for signature 'ContigOrdering'
plotContigOrder(contigOrder, lg = "all",
verbose = TRUE)
|
contigOrder |
matrix from orderAllContigs with the subdivided linkage groups and the names of the contigs to plot |
lg |
Integer specifying the linkage group by which to plot. Default is all |
verbose |
prints messages to the terminal (default is TRUE) |
A ggplot object (which will be plotted automatically if not assigned).
1 2 3 4 5 | #Get a data.frame of ordered contigs from cells from the same organism, aligned to the same genome
data("exampleContigOrder")
plotContigOrder(exampleContigOrder[[1]], lg=1)
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