makeBoxPlot: makeBoxPlot - creates boxplot of contigs included in the...

Description Usage Arguments Value Examples

Description

makeBoxPlot – creates boxplot of contigs included in the analysis vs those excluded

Usage

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## S4 method for signature 'ChrTable,LinkageGroupList'
makeBoxPlot(chrTable, linkage.contigs)

Arguments

chrTable

A GRanges object consisting of contigs and positions. A meta column called 'names' must be present with names in the same format as those from linkage.contigs. Generated by makeChrTable().

linkage.contigs

A list of clustered contigs, generated by clusterContigs()

Value

a box plot of included and excluded contigs

Examples

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#make an example barplot of data

data("exampleLGList")
data("exampleChrTable")
makeBoxPlot(exampleChrTable, exampleLGList)

contiBAIT documentation built on Nov. 8, 2020, 5:49 p.m.