ContigOrdering: A class for storing contig ordering of a linkage group
In contiBAIT: Improves Early Build Genome Assemblies using Strand-Seq Data
Description
Usage
Arguments
Value
Examples
Description
This class is a matrix of two character vectors that represent the calculated ordering of a linkage group.
The first element of this matrix is the Linkage Group sub-setted by contigs with equal strand states across all libraries
in the calculated order.
The second element is the names of names of each contig in the calculated order.
Usage
1
ContigOrdering(ordering = character())
Arguments
ordering
a matrix of two character vectors that represent the calculated ordering of a linkage group.
The first element of this matrix is the Linkage Group sub-setted by contigs with equal strand states across all libraries
in the calculated order.
The second element is the names of names of each contig in the calculated order.
Value
a ContigOrdering
Examples
1
2
thisOrdering <- ContigOrdering(matrix(ncol=2, c( "LG1.11", "chr2:1000820-2001640",
"LG1.1", "chr2:3002461-4003281")))
contiBAIT documentation built on Nov. 8, 2020, 5:49 p.m.
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Description Usage Arguments Value Examples
Description
This class is a matrix of two character vectors that represent the calculated ordering of a linkage group. The first element of this matrix is the Linkage Group sub-setted by contigs with equal strand states across all libraries in the calculated order. The second element is the names of names of each contig in the calculated order.
Usage
1 | ContigOrdering(ordering = character())
|
Arguments
ordering |
a matrix of two character vectors that represent the calculated ordering of a linkage group. The first element of this matrix is the Linkage Group sub-setted by contigs with equal strand states across all libraries in the calculated order. The second element is the names of names of each contig in the calculated order. |
Value
a ContigOrdering
Examples
1 2 | thisOrdering <- ContigOrdering(matrix(ncol=2, c( "LG1.11", "chr2:1000820-2001640",
"LG1.1", "chr2:3002461-4003281")))
|
R Package Documentation
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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