ellispatrick/spicyR: Spatial analysis of in situ cytometry data

The spicyR package provides a framework for performing inference on changes in spatial relationships between pairs of cell types for cell-resolution spatial omics technologies. spicyR consists of three primary steps: (i) summarizing the degree of spatial localization between pairs of cell types for each image; (ii) modelling the variability in localization summary statistics as a function of cell counts and (iii) testing for changes in spatial localizations associated with a response variable.

Getting started

Package details

Bioconductor views CellBasedAssays SingleCell Spatial
LicenseGPL (>=2)
URL https://ellispatrick.github.io/spicyR/ https://github.com/ellispatrick/spicyR
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
ellispatrick/spicyR documentation built on Sept. 21, 2023, 9:15 a.m.