README.md

spicyR

Spatial analysis of in situ cytometry data.

Overview

spicyR provides a series of functions to aid in the analysis of both immunofluorescence and mass cytometry imaging data as well as other assays that can deeply phenotype individual cells and their spatial location such as high-definiton spatial transcriptomics.

Installation

# Install the development version from GitHub:
# install.packages("devtools")
devtools::install_github("ellispatrick/spicyR")
library(spicyR)

Submitting an issue or feature request

spicyR is still under active development. We would greatly appreciate any and all feedback related to the package.

Author



ellispatrick/spicyR documentation built on March 22, 2021, 2:26 a.m.