Man pages for ellispatrick/spicyR
Spatial analysis of in situ cytometry data
| Accessors | Accessors for SegmentedCells |
| as.data.frame.SegmentedCells | as.data.frame |
| bind | Produces a dataframe showing L-function metric for each... |
| colTest | Perform a simple wilcoxon-rank-sum test or t-test on the... |
| convPairs | Converts colPairs object into an abundance matrix based on... |
| diabetesData | Diabetes IMC data |
| diabetesData_SCE | Diabetes IMC data in SCE format. |
| getPairwise | Get statistic from pairwise L curve of a single image. |
| getProp | Get proportions from a SegmentedCells, SingleCellExperiment,... |
| plot-SegmentedCells | A basic plot for SegmentedCells object |
| SegmentedCells | The SegmentedCells class |
| show-SegmentedCells | Show SegmentedCells |
| signifPlot | Plots result of signifPlot. |
| spicy | Performs spatial tests on spatial cytometry data. |
| spicyBoxPlot | Plots boxplot for a specified cell-cell relationship |
| spicyTest | Results from spicy for diabetesData |
| topPairs | A table of the significant results from spicy tests |
