topPairs: A table of the significant results from spicy tests

In ellispatrick/spicyR: Spatial analysis of in situ cytometry data

A table of the significant results from spicy tests

Description

A table of the significant results from spicy tests

Usage

topPairs(x, coef = NULL, n = 10, adj = "fdr", cutoff = NULL, figures = NULL)

Arguments

x	The output from spicy.
coef	Which coefficient to list.
n	Extract the top n most significant pairs.
adj	Which p-value adjustment method to use, argument for p.adjust().
cutoff	A p-value threshold to extract significant pairs.
figures	Round to 'figures' significant figures.

Value

A data.frame

Examples

data(spicyTest)
topPairs(spicyTest)

ellispatrick/spicyR documentation built on April 22, 2024, 12:24 p.m.