signifPlot: Plots result of signifPlot.

Description Usage Arguments Value Examples

Description

Plots result of signifPlot.

Usage

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signifPlot(
  results,
  fdr = FALSE,
  breaks = c(-5, 5, 0.5),
  colors = c("blue", "white", "red"),
  marksToPlot = NULL
)

Arguments

results

Data frame obtained from spicy.

fdr

TRUE if FDR correction is used.

breaks

Vector of 3 numbers giving breaks used in pheatmap. The first number is the minimum, the second is the maximum, the third is the number of breaks.

colors

Vector of colours to use in pheatmap.

marksToPlot

Vector of marks to include in pheatmap.

Value

a pheatmap object

Examples

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data(spicyTest)
signifPlot(spicyTest, breaks=c(-3, 3, 0.5))

ellispatrick/spicyR documentation built on March 22, 2021, 2:26 a.m.