spicyBoxPlot: Plots boxplot for a specified cell-cell relationship

In ellispatrick/spicyR: Spatial analysis of in situ cytometry data

Plots boxplot for a specified cell-cell relationship

Description

Plots boxplot for a specified cell-cell relationship

Usage

spicyBoxPlot(results, from = NULL, to = NULL, rank = NULL)

Arguments

results	Data frame obtained from spicy.
from	Cell type which you would like to compare to the to cell type.
to	Cell type which you would like to compare to the from cell type.
rank	Ranking of cell type in terms of p-value, the smaller the p-value the higher the rank.

Value

a ggplot2 boxplot

Examples

data(spicyTest)

spicyBoxPlot(spicyTest,
             rank = 1)

ellispatrick/spicyR documentation built on April 27, 2024, 10:14 a.m.