survBubble: Plots survival results from spicy.

In ellispatrick/spicyR: Spatial analysis of in situ cytometry data

Plots survival results from spicy.

Description

Plots survival results from spicy.

Usage

survBubble(
  result,
  fdr = FALSE,
  cutoff = 0.05,
  colourGradient = c("#4575B4", "white", "#D73027"),
  marksToPlot = NULL,
  contextColours = NULL,
  contextLabels = waiver()
)

Arguments

result	A spicyResults object that contains survival results.
fdr	TRUE if FDR correction is used.
cutoff	Significance threshold for circles in bubble plot.
colourGradient	A vector of colours, used to define the low, medium, and high values for the colour scale.
marksToPlot	Vector of marks to include in bubble plot.
contextColours	Used for Kontextual results. A named list specifying the colours for each context. By default the Tableau colour palette is used.
contextLabels	Used for Kontextual results. A named list to change the default labels for each context.

Value

A ggplot object.

ellispatrick/spicyR documentation built on Dec. 20, 2024, 10:50 a.m.