API for ellispatrick/spicyR
Spatial analysis of in situ cytometry data
| Global functions | |
|---|---|
| .SegmentedCells_show | Source code |
| .format_data | Source code |
| .putData | Source code |
| .show_SpicyResults | Source code |
| Accessors | Man page |
| SegmentedCells | Man page Source code |
| SegmentedCells,SegmentedCells-method | Man page |
| SegmentedCells-class | Man page |
| SpicyResults,list,ANY-method | Man page |
| SpicyResults-class | Man page |
| as.data.frame.SegmentedCells | Man page Source code |
| bind | Man page |
| bubblePlot | Source code |
| cellAnnotation | Man page |
| cellAnnotation,SegmentedCells-method | Man page |
| cellAnnotation<- | Man page |
| cellAnnotation<-,SegmentedCells-method | Man page |
| cellID | Man page |
| cellID,SegmentedCells-method | Man page |
| cellID<- | Man page |
| cellID<-,SegmentedCells-method | Man page |
| cellMarks | Man page |
| cellMarks,SegmentedCells-method | Man page |
| cellMarks<- | Man page |
| cellMarks<-,SegmentedCells-method | Man page |
| cellMorph | Man page |
| cellMorph,SegmentedCells-method | Man page |
| cellMorph<- | Man page |
| cellMorph<-,SegmentedCells-method | Man page |
| cellSummary | Man page |
| cellSummary,SegmentedCells-method | Man page |
| cellSummary<- | Man page |
| cellSummary<-,SegmentedCells-method | Man page |
| cellType | Man page |
| cellType,SegmentedCells-method | Man page |
| cellType<- | Man page |
| cellType<-,SegmentedCells-method | Man page |
| cleanLM | Source code |
| cleanMEM | Source code |
| colTest | Man page |
| convPairs | Man page Source code |
| diabetesData | Man page |
| diabetesData_SCE | Man page |
| filterCells | Man page |
| filterCells,SegmentedCells-method | Man page |
| getPairwise | Man page Source code |
| getProp | Man page Source code |
| imageCellID | Man page |
| imageCellID,SegmentedCells-method | Man page |
| imageCellID<- | Man page |
| imageCellID<-,SegmentedCells-method | Man page |
| imageID | Man page |
| imageID,SegmentedCells-method | Man page |
| imagePheno | Man page |
| imagePheno,SegmentedCells-method | Man page |
| imagePheno<- | Man page |
| imagePheno<-,SegmentedCells-method | Man page |
| inhomL | Source code |
| inhomLPair | Source code |
| isKonditional | Source code |
| makeWindow | Source code |
| plot | Man page |
| plot,SegmentedCells | Man page |
| plot,SegmentedCells,ANY-method | Man page |
| plot.SegmentedCells | Source code |
| show | Man page |
| show-SegmentedCells | Man page |
| signifPlot | Man page Source code |
| spatialLM | Source code |
| spatialMEM | Source code |
| spicy | Man page Source code |
| spicy,spicy-method | Man page |
| spicyBoxPlot | Man page Source code |
| spicyTest | Man page |
| topPairs | Man page |
| topPairs,SpicyResults-method | Man page |
