Files in ellispatrick/spicyR
Spatial analysis of in situ cytometry data
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/AllClasses.R
R/AllGenerics.R
R/convPairs.R
R/data.R
R/plot-segmentedCells.R
R/segmentedCells-class.R
R/show-segmentedCells.R
R/signifPlot.R
R/spicy.R
R/spicyBoxPlot.R
R/utilities.R
README.md
_pkgdown.yml
data/diabetesData.rda
data/diabetesData_SCE.rda
data/spicyTest.rda
docs/404.html
docs/articles/deprecated/segmentedCells.html
docs/articles/deprecated/segmentedCells_files/figure-html/unnamed-chunk-10-1.png
docs/articles/index.html
docs/articles/segmentedCells.html
docs/articles/segmentedCells_files/figure-html/unnamed-chunk-10-1.png
docs/articles/spicyR.html
docs/articles/spicyR_files/figure-html/unnamed-chunk-7-1.png
docs/articles/spicyR_files/figure-html/unnamed-chunk-9-1.png
docs/articles/spicy_files/figure-html/unnamed-chunk-9-1.png
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/deps/bootstrap-5.1.3/bootstrap.bundle.min.js
docs/deps/bootstrap-5.1.3/bootstrap.bundle.min.js.map
docs/deps/bootstrap-5.1.3/bootstrap.min.css
docs/deps/bootstrap-5.1.3/font.css
docs/deps/bootstrap-5.1.3/fonts/1Ptxg8zYS_SKggPN4iEgvnHyvveLxVs9pbCIPrc.woff
docs/deps/bootstrap-5.1.3/fonts/1Ptxg8zYS_SKggPN4iEgvnHyvveLxVvaorCIPrc.woff
docs/deps/bootstrap-5.1.3/fonts/4iCs6KVjbNBYlgo6ew.woff
docs/deps/bootstrap-5.1.3/fonts/4iCs6KVjbNBYlgoKfw7w.woff
docs/deps/bootstrap-5.1.3/fonts/4iCv6KVjbNBYlgoCxCvTtA.woff
docs/deps/bootstrap-5.1.3/fonts/4iCv6KVjbNBYlgoCxCvjsGyL.woff
docs/deps/bootstrap-5.1.3/fonts/6xK1dSBYKcSV-LCoeQqfX1RYOo3qPZ7nsDQ.woff
docs/deps/bootstrap-5.1.3/fonts/6xK1dSBYKcSV-LCoeQqfX1RYOo3qPa7j.woff
docs/deps/bootstrap-5.1.3/fonts/6xK3dSBYKcSV-LCoeQqfX1RYOo3aPA.woff
docs/deps/bootstrap-5.1.3/fonts/6xK3dSBYKcSV-LCoeQqfX1RYOo3qOK7j.woff
docs/deps/bootstrap-5.1.3/fonts/6xKydSBYKcSV-LCoeQqfX1RYOo3i54rAkw.woff
docs/deps/bootstrap-5.1.3/fonts/6xKydSBYKcSV-LCoeQqfX1RYOo3ig4vAkw.woff
docs/deps/bootstrap-5.1.3/fonts/6xKydSBYKcSV-LCoeQqfX1RYOo3ig4vwlxdo.woff
docs/deps/bootstrap-5.1.3/fonts/6xKydSBYKcSV-LCoeQqfX1RYOo3ik4zAkw.woff
docs/deps/bootstrap-5.1.3/fonts/6xKydSBYKcSV-LCoeQqfX1RYOo3ik4zwlxdo.woff
docs/deps/bootstrap-5.1.3/fonts/CSR54z1Qlv-GDxkbKVQ_dFsvWNRevw.woff
docs/deps/bootstrap-5.1.3/fonts/CSR54z1Qlv-GDxkbKVQ_dFsvaNA.woff
docs/deps/bootstrap-5.1.3/fonts/CSR64z1Qlv-GDxkbKVQ_TOQ.woff
docs/deps/bootstrap-5.1.3/fonts/CSR64z1Qlv-GDxkbKVQ_fOAKSw.woff
docs/deps/bootstrap-5.1.3/fonts/JTURjIg1_i6t8kCHKm45_ZpC7g0.woff
docs/deps/bootstrap-5.1.3/fonts/JTURjIg1_i6t8kCHKm45_dJE7g0.woff
docs/deps/bootstrap-5.1.3/fonts/JTUSjIg1_i6t8kCHKm45xW0.woff
docs/deps/bootstrap-5.1.3/fonts/KFOlCnqEu92Fr1MmEU9fBBc-.woff
docs/deps/bootstrap-5.1.3/fonts/KFOlCnqEu92Fr1MmEU9vAA.woff
docs/deps/bootstrap-5.1.3/fonts/KFOlCnqEu92Fr1MmSU5fBBc-.woff
docs/deps/bootstrap-5.1.3/fonts/KFOlCnqEu92Fr1MmSU5vAA.woff
docs/deps/bootstrap-5.1.3/fonts/KFOlCnqEu92Fr1MmWUlfBBc-.woff
docs/deps/bootstrap-5.1.3/fonts/KFOlCnqEu92Fr1MmWUlvAA.woff
docs/deps/bootstrap-5.1.3/fonts/KFOmCnqEu92Fr1Me5g.woff
docs/deps/bootstrap-5.1.3/fonts/KFOmCnqEu92Fr1Mu4mxM.woff
docs/deps/bootstrap-5.1.3/fonts/QGYpz_kZZAGCONcK2A4bGOj8mNhL.woff
docs/deps/bootstrap-5.1.3/fonts/S6u8w4BMUTPHjxsAXC-s.woff
docs/deps/bootstrap-5.1.3/fonts/S6u8w4BMUTPHjxswWA.woff
docs/deps/bootstrap-5.1.3/fonts/S6u9w4BMUTPHh6UVSwiPHw.woff
docs/deps/bootstrap-5.1.3/fonts/S6u9w4BMUTPHh6UVeww.woff
docs/deps/bootstrap-5.1.3/fonts/S6u9w4BMUTPHh7USSwiPHw.woff
docs/deps/bootstrap-5.1.3/fonts/S6u9w4BMUTPHh7USeww.woff
docs/deps/bootstrap-5.1.3/fonts/S6uyw4BMUTPHjx4wWA.woff
docs/deps/bootstrap-5.1.3/fonts/S6uyw4BMUTPHvxo.woff
docs/deps/bootstrap-5.1.3/fonts/UcCO3FwrK3iLTeHuS_fvQtMwCp50KnMw2boKoduKmMEVuFuYMZs.woff
docs/deps/bootstrap-5.1.3/fonts/UcCO3FwrK3iLTeHuS_fvQtMwCp50KnMw2boKoduKmMEVuI6fMZs.woff
docs/deps/bootstrap-5.1.3/fonts/UcCO3FwrK3iLTeHuS_fvQtMwCp50KnMw2boKoduKmMEVuLyfMZs.woff
docs/deps/bootstrap-5.1.3/fonts/XRXV3I6Li01BKof4MQ.woff
docs/deps/bootstrap-5.1.3/fonts/XRXW3I6Li01BKofA6sKkZQ.woff
docs/deps/bootstrap-5.1.3/fonts/XRXW3I6Li01BKofAjsOkZQ.woff
docs/deps/bootstrap-5.1.3/fonts/memQYaGs126MiZpBA-UFUIcVXSCEkx2cmqvXlWq8tWZ0Pw86hd0Rk5hkWVAexg.woff
docs/deps/bootstrap-5.1.3/fonts/memQYaGs126MiZpBA-UFUIcVXSCEkx2cmqvXlWq8tWZ0Pw86hd0Rk5hkaVQ.woff
docs/deps/bootstrap-5.1.3/fonts/memQYaGs126MiZpBA-UFUIcVXSCEkx2cmqvXlWq8tWZ0Pw86hd0Rk8ZkWVAexg.woff
docs/deps/bootstrap-5.1.3/fonts/memQYaGs126MiZpBA-UFUIcVXSCEkx2cmqvXlWq8tWZ0Pw86hd0Rk8ZkaVQ.woff
docs/deps/bootstrap-5.1.3/fonts/memQYaGs126MiZpBA-UFUIcVXSCEkx2cmqvXlWq8tWZ0Pw86hd0RkyFjWVAexg.woff
docs/deps/bootstrap-5.1.3/fonts/memQYaGs126MiZpBA-UFUIcVXSCEkx2cmqvXlWq8tWZ0Pw86hd0RkyFjaVQ.woff
docs/deps/bootstrap-5.1.3/fonts/memSYaGs126MiZpBA-UvWbX2vVnXBbObj2OVZyOOSr4dVJWUgsg-1x4gaVQ.woff
docs/deps/bootstrap-5.1.3/fonts/memSYaGs126MiZpBA-UvWbX2vVnXBbObj2OVZyOOSr4dVJWUgsg-1y4k.woff
docs/deps/bootstrap-5.1.3/fonts/memSYaGs126MiZpBA-UvWbX2vVnXBbObj2OVZyOOSr4dVJWUgsiH0B4gaVQ.woff
docs/deps/bootstrap-5.1.3/fonts/memSYaGs126MiZpBA-UvWbX2vVnXBbObj2OVZyOOSr4dVJWUgsiH0C4k.woff
docs/deps/bootstrap-5.1.3/fonts/memSYaGs126MiZpBA-UvWbX2vVnXBbObj2OVZyOOSr4dVJWUgsjZ0B4gaVQ.woff
docs/deps/bootstrap-5.1.3/fonts/memSYaGs126MiZpBA-UvWbX2vVnXBbObj2OVZyOOSr4dVJWUgsjZ0C4k.woff
docs/deps/bootstrap-5.1.3/fonts/pe03MImSLYBIv1o4X1M8cc9iB_5p.woff
docs/deps/bootstrap-5.1.3/fonts/pe0qMImSLYBIv1o4X1M8cfe5.woff
docs/deps/bootstrap-5.1.3/fonts/q5uGsou0JOdh94bfvQlr.woff
docs/deps/bootstrap-5.2.2/bootstrap.bundle.min.js
docs/deps/bootstrap-5.2.2/bootstrap.bundle.min.js.map
docs/deps/bootstrap-5.2.2/bootstrap.min.css
docs/deps/bootstrap-5.2.2/font.css
docs/deps/bootstrap-5.2.2/fonts/1Ptxg8zYS_SKggPN4iEgvnHyvveLxVs9pbCIPrc.woff
docs/deps/bootstrap-5.2.2/fonts/1Ptxg8zYS_SKggPN4iEgvnHyvveLxVvaorCIPrc.woff
docs/deps/bootstrap-5.2.2/fonts/1adeadb2fe618c5ed46221f15e12b9c8.woff
docs/deps/bootstrap-5.2.2/fonts/4iCs6KVjbNBYlgo6ew.woff
docs/deps/bootstrap-5.2.2/fonts/4iCs6KVjbNBYlgoKfw7w.woff
docs/deps/bootstrap-5.2.2/fonts/4iCv6KVjbNBYlgoCxCvTtA.woff
docs/deps/bootstrap-5.2.2/fonts/4iCv6KVjbNBYlgoCxCvjsGyL.woff
docs/deps/bootstrap-5.2.2/fonts/6xK1dSBYKcSV-LCoeQqfX1RYOo3qPZ7nsDQ.woff
docs/deps/bootstrap-5.2.2/fonts/6xK1dSBYKcSV-LCoeQqfX1RYOo3qPa7j.woff
docs/deps/bootstrap-5.2.2/fonts/6xK3dSBYKcSV-LCoeQqfX1RYOo3aPA.woff
docs/deps/bootstrap-5.2.2/fonts/6xK3dSBYKcSV-LCoeQqfX1RYOo3qOK7j.woff
docs/deps/bootstrap-5.2.2/fonts/6xKydSBYKcSV-LCoeQqfX1RYOo3i54rAkw.woff
docs/deps/bootstrap-5.2.2/fonts/6xKydSBYKcSV-LCoeQqfX1RYOo3ig4vAkw.woff
docs/deps/bootstrap-5.2.2/fonts/6xKydSBYKcSV-LCoeQqfX1RYOo3ig4vwlxdo.woff
docs/deps/bootstrap-5.2.2/fonts/6xKydSBYKcSV-LCoeQqfX1RYOo3ik4zAkw.woff
docs/deps/bootstrap-5.2.2/fonts/6xKydSBYKcSV-LCoeQqfX1RYOo3ik4zwlxdo.woff
docs/deps/bootstrap-5.2.2/fonts/CSR54z1Qlv-GDxkbKVQ_dFsvWNRevw.woff
docs/deps/bootstrap-5.2.2/fonts/CSR54z1Qlv-GDxkbKVQ_dFsvaNA.woff
docs/deps/bootstrap-5.2.2/fonts/CSR64z1Qlv-GDxkbKVQ_TOQ.woff
docs/deps/bootstrap-5.2.2/fonts/CSR64z1Qlv-GDxkbKVQ_fOAKSw.woff
docs/deps/bootstrap-5.2.2/fonts/HI_diYsKILxRpg3hIP6sJ7fM7PqPMcMnZFqUwX28DBKXhM0.woff
docs/deps/bootstrap-5.2.2/fonts/HI_diYsKILxRpg3hIP6sJ7fM7PqPMcMnZFqUwX28DMyQhM0.woff
docs/deps/bootstrap-5.2.2/fonts/HI_jiYsKILxRpg3hIP6sJ7fM7PqlOPHYvDP_W9O7GQTTbI1rSg.woff
docs/deps/bootstrap-5.2.2/fonts/HI_jiYsKILxRpg3hIP6sJ7fM7PqlOPHYvDP_W9O7GQTTsoprSg.woff
docs/deps/bootstrap-5.2.2/fonts/JTUHjIg1_i6t8kCHKm4532VJOt5-QNFgpCtZ6Ew9.woff
docs/deps/bootstrap-5.2.2/fonts/JTUHjIg1_i6t8kCHKm4532VJOt5-QNFgpCtr6Ew9.woff
docs/deps/bootstrap-5.2.2/fonts/JTUHjIg1_i6t8kCHKm4532VJOt5-QNFgpCuM70w9.woff
docs/deps/bootstrap-5.2.2/fonts/KFOlCnqEu92Fr1MmEU9fBBc-.woff
docs/deps/bootstrap-5.2.2/fonts/KFOlCnqEu92Fr1MmEU9vAA.woff
docs/deps/bootstrap-5.2.2/fonts/KFOlCnqEu92Fr1MmSU5fBBc-.woff
docs/deps/bootstrap-5.2.2/fonts/KFOlCnqEu92Fr1MmSU5vAA.woff
docs/deps/bootstrap-5.2.2/fonts/KFOlCnqEu92Fr1MmWUlfBBc-.woff
docs/deps/bootstrap-5.2.2/fonts/KFOlCnqEu92Fr1MmWUlvAA.woff
docs/deps/bootstrap-5.2.2/fonts/KFOmCnqEu92Fr1Me5g.woff
docs/deps/bootstrap-5.2.2/fonts/KFOmCnqEu92Fr1Mu4mxM.woff
docs/deps/bootstrap-5.2.2/fonts/QGYpz_kZZAGCONcK2A4bGOj8mNhL.woff
docs/deps/bootstrap-5.2.2/fonts/S6u8w4BMUTPHjxsAXC-s.woff
docs/deps/bootstrap-5.2.2/fonts/S6u8w4BMUTPHjxswWA.woff
docs/deps/bootstrap-5.2.2/fonts/S6u9w4BMUTPHh6UVSwiPHw.woff
docs/deps/bootstrap-5.2.2/fonts/S6u9w4BMUTPHh6UVeww.woff
docs/deps/bootstrap-5.2.2/fonts/S6u9w4BMUTPHh7USSwiPHw.woff
docs/deps/bootstrap-5.2.2/fonts/S6u9w4BMUTPHh7USeww.woff
docs/deps/bootstrap-5.2.2/fonts/S6uyw4BMUTPHjx4wWA.woff
docs/deps/bootstrap-5.2.2/fonts/S6uyw4BMUTPHvxo.woff
docs/deps/bootstrap-5.2.2/fonts/UcCO3FwrK3iLTeHuS_fvQtMwCp50KnMw2boKoduKmMEVuFuYMZs.woff
docs/deps/bootstrap-5.2.2/fonts/UcCO3FwrK3iLTeHuS_fvQtMwCp50KnMw2boKoduKmMEVuI6fMZs.woff
docs/deps/bootstrap-5.2.2/fonts/UcCO3FwrK3iLTeHuS_fvQtMwCp50KnMw2boKoduKmMEVuLyfMZs.woff
docs/deps/bootstrap-5.2.2/fonts/XRXI3I6Li01BKofiOc5wtlZ2di8HDFwmRTA.woff
docs/deps/bootstrap-5.2.2/fonts/XRXI3I6Li01BKofiOc5wtlZ2di8HDGUmRTA.woff
docs/deps/bootstrap-5.2.2/fonts/XRXI3I6Li01BKofiOc5wtlZ2di8HDLshRTA.woff
docs/deps/bootstrap-5.2.2/fonts/a98f7a7574819ba83bec6279a2cecd95.woff
docs/deps/bootstrap-5.2.2/fonts/memQYaGs126MiZpBA-UFUIcVXSCEkx2cmqvXlWq8tWZ0Pw86hd0Rk0ZjaVQ.woff
docs/deps/bootstrap-5.2.2/fonts/memQYaGs126MiZpBA-UFUIcVXSCEkx2cmqvXlWq8tWZ0Pw86hd0Rk5hkWVAexg.woff
docs/deps/bootstrap-5.2.2/fonts/memQYaGs126MiZpBA-UFUIcVXSCEkx2cmqvXlWq8tWZ0Pw86hd0Rk5hkaVQ.woff
docs/deps/bootstrap-5.2.2/fonts/memQYaGs126MiZpBA-UFUIcVXSCEkx2cmqvXlWq8tWZ0Pw86hd0Rk8ZkWVAexg.woff
docs/deps/bootstrap-5.2.2/fonts/memQYaGs126MiZpBA-UFUIcVXSCEkx2cmqvXlWq8tWZ0Pw86hd0Rk8ZkaVQ.woff
docs/deps/bootstrap-5.2.2/fonts/memQYaGs126MiZpBA-UFUIcVXSCEkx2cmqvXlWq8tWZ0Pw86hd0Rk_RkaVQ.woff
docs/deps/bootstrap-5.2.2/fonts/memQYaGs126MiZpBA-UFUIcVXSCEkx2cmqvXlWq8tWZ0Pw86hd0RkxhjaVQ.woff
docs/deps/bootstrap-5.2.2/fonts/memQYaGs126MiZpBA-UFUIcVXSCEkx2cmqvXlWq8tWZ0Pw86hd0RkyFjWVAexg.woff
docs/deps/bootstrap-5.2.2/fonts/memQYaGs126MiZpBA-UFUIcVXSCEkx2cmqvXlWq8tWZ0Pw86hd0RkyFjaVQ.woff
docs/deps/bootstrap-5.2.2/fonts/memSYaGs126MiZpBA-UvWbX2vVnXBbObj2OVZyOOSr4dVJWUgsg-1x4gaVQ.woff
docs/deps/bootstrap-5.2.2/fonts/memSYaGs126MiZpBA-UvWbX2vVnXBbObj2OVZyOOSr4dVJWUgsg-1y4k.woff
docs/deps/bootstrap-5.2.2/fonts/memSYaGs126MiZpBA-UvWbX2vVnXBbObj2OVZyOOSr4dVJWUgsgH1y4k.woff
docs/deps/bootstrap-5.2.2/fonts/memSYaGs126MiZpBA-UvWbX2vVnXBbObj2OVZyOOSr4dVJWUgshZ1y4k.woff
docs/deps/bootstrap-5.2.2/fonts/memSYaGs126MiZpBA-UvWbX2vVnXBbObj2OVZyOOSr4dVJWUgsiH0B4gaVQ.woff
docs/deps/bootstrap-5.2.2/fonts/memSYaGs126MiZpBA-UvWbX2vVnXBbObj2OVZyOOSr4dVJWUgsiH0C4k.woff
docs/deps/bootstrap-5.2.2/fonts/memSYaGs126MiZpBA-UvWbX2vVnXBbObj2OVZyOOSr4dVJWUgsjZ0B4gaVQ.woff
docs/deps/bootstrap-5.2.2/fonts/memSYaGs126MiZpBA-UvWbX2vVnXBbObj2OVZyOOSr4dVJWUgsjZ0C4k.woff
docs/deps/bootstrap-5.2.2/fonts/memSYaGs126MiZpBA-UvWbX2vVnXBbObj2OVZyOOSr4dVJWUgsjr0C4k.woff
docs/deps/bootstrap-5.2.2/fonts/q5uGsou0JOdh94bfvQlr.woff
docs/deps/data-deps.txt
docs/deps/jquery-3.6.0/jquery-3.6.0.js
docs/deps/jquery-3.6.0/jquery-3.6.0.min.js
docs/deps/jquery-3.6.0/jquery-3.6.0.min.map
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/link.svg
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/Accessors.html
docs/reference/Rplot001.png
docs/reference/as.data.frame.SegmentedCells.html
docs/reference/colTest.html
docs/reference/diabetesData.html
docs/reference/diabetesData_SCE.html
docs/reference/getPairwise.html
docs/reference/getProp.html
docs/reference/index.html
docs/reference/plot-SegmentedCells.html
docs/reference/show-SegmentedCells.html
docs/reference/signifPlot-1.png
docs/reference/signifPlot.html
docs/reference/spicyTest.html
docs/reference/spicyTestBootstrap.html
docs/reference/topPairs.html
docs/search.json
docs/sitemap.xml
inst/CITATION
inst/extdata/isletCells.txt.gz
inst/spicyR.png
man/Accessors.Rd
man/SegmentedCells.Rd
man/as.data.frame.SegmentedCells.Rd
man/bind.Rd
man/colTest.Rd
man/convPairs.Rd
man/diabetesData.Rd
man/diabetesData_SCE.Rd
man/getPairwise.Rd
man/getProp.Rd
man/plot-SegmentedCells.Rd
man/show-SegmentedCells.Rd
man/signifPlot.Rd
man/spicy.Rd
man/spicyBoxPlot.Rd
man/spicyTest.Rd
man/topPairs.Rd
tests/testthat.R
tests/testthat/test-spicyR.R
vignettes/spicyR.Rmd
