CFAssay: Statistical analysis for the Colony Formation Assay
Version 1.10.0

The package provides functions for calculation of linear-quadratic cell survival curves and for ANOVA of experimental 2-way designs along with the colony formation assay.

AuthorHerbert Braselmann
Bioconductor views CellBasedAssays CellBiology Regression Survival
Date of publicationNone
MaintainerHerbert Braselmann <braselm@helmholtz-muenchen.de>
LicenseLGPL
Version1.10.0
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("CFAssay")

Popular man pages

cellsurvLQdiff: Comparison of two linear-quadratic cell survival curves
cellsurvLQfit: Fit the linear-quadratic (LQ) model to cell survival data
plot.cellsurvLQfit: Plot of an LQ model fit
plotExp: Generic plotting of experimental repeats
plotExp.default: Default function for plotting of experimental repeats
print.cellsurvLQfit: Print summary of an LQ-model fit for cell survival data
sfpmean: Pointwise mean survival fractions for curves with several...
See all...

All man pages Function index File listing

Man pages

cellsurvLQdiff: Comparison of two linear-quadratic cell survival curves
cellsurvLQfit: Fit the linear-quadratic (LQ) model to cell survival data
cfa2way: Two-way analysis for cell survival data
pes: Calculation of plating efficiencies from a curve data set...
plot.cellsurvLQfit: Plot of an LQ model fit
plotExp: Generic plotting of experimental repeats
plotExp.cellsurvLQfit: Diagnostic plots of LQ model versus experiments
plotExp.cfa2way: Diagnostic plot of experimental replicates for two-way...
plotExp.default: Default function for plotting of experimental repeats
print.cellsurvLQdiff: Print test results of comparison of two linear-quadratic cell...
print.cellsurvLQfit: Print summary of an LQ-model fit for cell survival data
print.cfa2way: Print summary of two-way analysis for cell survival data.
sfpmean: Pointwise mean survival fractions for curves with several...

Functions

cellsurvLQdiff Man page Source code
cellsurvLQfit Man page Source code
cfa2way Man page Source code
pes Man page Source code
plot.cellsurvLQfit Man page Source code
plotExp Man page Source code
plotExp.cellsurvLQfit Man page Source code
plotExp.cfa2way Man page Source code
plotExp.default Man page Source code
print.cellsurvLQdiff Man page Source code
print.cellsurvLQfit Man page Source code
print.cfa2way Man page Source code
sfpmean Man page Source code

Files

DESCRIPTION
NAMESPACE
R
R/cellsurvLQdiff.R
R/cellsurvLQfit.R
R/cfa2way.R
R/pes.R
R/plot.cellsurvLQfit.R
R/plotExp.R
R/plotExp.cellsurvLQfit.R
R/plotExp.cfa2way.R
R/print.cellsurvLQdiff.R
R/print.cellsurvLQfit.R
R/print.cfa2way.R
R/sfpmean.R
build
build/vignette.rds
inst
inst/NEWS
inst/doc
inst/doc/cfassay.R
inst/doc/cfassay.Rnw
inst/doc/cfassay.pdf
inst/doc/exp2_2waycfa.txt
inst/doc/expl1_cellsurvcurves.txt
man
man/cellsurvLQdiff.Rd
man/cellsurvLQfit.Rd
man/cfa2way.Rd
man/pes.Rd
man/plot.cellsurvLQfit.Rd
man/plotExp.Rd
man/plotExp.cellsurvLQfit.Rd
man/plotExp.cfa2way.Rd
man/plotExp.default.Rd
man/print.cellsurvLQdiff.Rd
man/print.cellsurvLQfit.Rd
man/print.cfa2way.Rd
man/sfpmean.Rd
vignettes
vignettes/cfassay.Rnw
vignettes/cfassay.bib
CFAssay documentation built on May 20, 2017, 10:03 p.m.

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