CFAssay: Statistical analysis for the Colony Formation Assay

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The package provides functions for calculation of linear-quadratic cell survival curves and for ANOVA of experimental 2-way designs along with the colony formation assay.

Author
Herbert Braselmann
Date of publication
None
Maintainer
Herbert Braselmann <braselm@helmholtz-muenchen.de>
License
LGPL
Version
1.8.0

View on Bioconductor

Man pages

cellsurvLQdiff
Comparison of two linear-quadratic cell survival curves
cellsurvLQfit
Fit the linear-quadratic (LQ) model to cell survival data
cfa2way
Two-way analysis for cell survival data
pes
Calculation of plating efficiencies from a curve data set...
plot.cellsurvLQfit
Plot of an LQ model fit
plotExp
Generic plotting of experimental repeats
plotExp.cellsurvLQfit
Diagnostic plots of LQ model versus experiments
plotExp.cfa2way
Diagnostic plot of experimental replicates for two-way...
plotExp.default
Default function for plotting of experimental repeats
print.cellsurvLQdiff
Print test results of comparison of two linear-quadratic cell...
print.cellsurvLQfit
Print summary of an LQ-model fit for cell survival data
print.cfa2way
Print summary of two-way analysis for cell survival data.
sfpmean
Pointwise mean survival fractions for curves with several...

Files in this package

CFAssay/DESCRIPTION
CFAssay/NAMESPACE
CFAssay/R
CFAssay/R/cellsurvLQdiff.R
CFAssay/R/cellsurvLQfit.R
CFAssay/R/cfa2way.R
CFAssay/R/pes.R
CFAssay/R/plot.cellsurvLQfit.R
CFAssay/R/plotExp.R
CFAssay/R/plotExp.cellsurvLQfit.R
CFAssay/R/plotExp.cfa2way.R
CFAssay/R/print.cellsurvLQdiff.R
CFAssay/R/print.cellsurvLQfit.R
CFAssay/R/print.cfa2way.R
CFAssay/R/sfpmean.R
CFAssay/build
CFAssay/build/vignette.rds
CFAssay/inst
CFAssay/inst/NEWS
CFAssay/inst/doc
CFAssay/inst/doc/cfassay.R
CFAssay/inst/doc/cfassay.Rnw
CFAssay/inst/doc/cfassay.pdf
CFAssay/inst/doc/exp2_2waycfa.txt
CFAssay/inst/doc/expl1_cellsurvcurves.txt
CFAssay/man
CFAssay/man/cellsurvLQdiff.Rd
CFAssay/man/cellsurvLQfit.Rd
CFAssay/man/cfa2way.Rd
CFAssay/man/pes.Rd
CFAssay/man/plot.cellsurvLQfit.Rd
CFAssay/man/plotExp.Rd
CFAssay/man/plotExp.cellsurvLQfit.Rd
CFAssay/man/plotExp.cfa2way.Rd
CFAssay/man/plotExp.default.Rd
CFAssay/man/print.cellsurvLQdiff.Rd
CFAssay/man/print.cellsurvLQfit.Rd
CFAssay/man/print.cfa2way.Rd
CFAssay/man/sfpmean.Rd
CFAssay/vignettes
CFAssay/vignettes/cfassay.Rnw
CFAssay/vignettes/cfassay.bib