cellGrowth: Fitting cell population growth models

This package provides functionalities for the fitting of cell population growth models on experimental OD curves.

Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("cellGrowth")
AuthorJulien Gagneur <gagneur@genzentrum.lmu.de>, Andreas Neudecker <a.neudecker@arcor.de>
Bioconductor views CellBasedAssays DataImport MicrotitrePlateAssay TimeCourse Visualization
Date of publicationNone
MaintainerJulien Gagneur <gagneur@genzentrum.lmu.de>
LicenseArtistic-2.0
Version1.20.0

View on Bioconductor

Files

DESCRIPTION
NAMESPACE
R
R/bandwidthCV.R R/baranyi.R R/fitCellGrowth.R R/fitCellGrowths.R R/getRowColumn.R R/getWellIdsTecan.R R/gompertz.R R/guessCellGrowthParams.R R/logistic.R R/plot.cellGrowthFit.R R/plot.well.R R/plotPlate.R R/readGenios.R R/readYeastGrower.R R/rosso.R R/standardWellId.R R/wellDataFrame.R
TODO.txt
build
build/vignette.rds
inst
inst/NEWS
inst/doc
inst/doc/cellGrowth.R
inst/doc/cellGrowth.Rnw
inst/doc/cellGrowth.pdf
inst/extdata
inst/extdata/Plate1_YPFruc.txt
inst/extdata/Plate1_YPMalt.txt
inst/extdata/Plate2_YPFruc.txt
inst/extdata/Plate2_YPMalt.txt
inst/extdata/customDataFormat.txt
inst/extdata/machineRun.txt
inst/extdata/plateLayout.txt
inst/extdata/tecan_genios.txt
man
man/bandwidthCV.Rd man/baranyi.Rd man/fitCellGrowth.Rd man/fitCellGrowths.Rd man/getRowColumn.Rd man/getWellIdsTecan.Rd man/gompertz.Rd man/guessCellGrowthParams.Rd man/logistic.Rd man/plot.cellGrowthFit.Rd man/plot.well.Rd man/plotPlate.Rd man/readGenios.Rd man/readYeastGrower.Rd man/rosso.Rd man/standardWellId.Rd man/wellDataFrame.Rd
script
script/buildman.R
script/buildman.sh
vignettes
vignettes/cellGrowth-platePlotex.pdf
vignettes/cellGrowth-plotex.pdf
vignettes/cellGrowth-welldatex.pdf
vignettes/cellGrowth.Rnw

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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