baranyi: Baranyi growth model

In cellGrowth: Fitting cell population growth models

Description

Baranyi growth model as defined in Kelly et al.

Usage

  baranyi(x, mu, l, z0, zmax)

Arguments

x	numeric vector: time points for which log(OD) must be computed
mu	numeric scalar: maximal growth rate parameter
l	numeric scalar: time lag parameter
z0	numeric scalar: minimal log(OD) parameter
zmax	numeric scalar: maximal log(OD) parameter

Value

numeric vector: log(OD) for the time points given in x

Author(s)

Julien Gagneur

References

Kelly et al., The use of dummy data points when fitting bacterial growth curves, IMA Journal of Mathematics Applied in Medicine and Biology (1999) 16, 155-170

Examples

x = 1:1000
y = baranyi(x, mu=0.01, l=200, z0=1, zmax=5)
plot(x,y)

Example output

Loading required package: locfit
locfit 1.5-9.1 	 2013-03-22

cellGrowth documentation built on Oct. 31, 2019, 8:38 a.m.