MPRAnalyze: Statistical Analysis of MPRA data

MPRAnalyze provides statistical framework for the analysis of data generated by Massively Parallel Reporter Assays (MPRAs), used to directly measure enhancer activity. MPRAnalyze can be used for quantification of enhancer activity, classification of active enhancers and comparative analyses of enhancer activity between conditions. MPRAnalyze construct a nested pair of generalized linear models (GLMs) to relate the DNA and RNA observations, easily adjustable to various experimental designs and conditions, and provides a set of rigorous statistical testig schemes.

Package details

AuthorTal Ashuach [aut, cre], David S Fischer [aut], Nir Yosef [ctb], Fabian J Theis [ctb],
Bioconductor views CellBasedAssays CellBiology DifferentialExpression GeneExpression ImmunoOncology Sequencing Software StatisticalMethod
MaintainerTal Ashuach <[email protected]>
LicenseGPL-3
Version1.2.0
URL https://github.com/YosefLab/MPRAnalyze
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("MPRAnalyze")

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MPRAnalyze documentation built on May 6, 2019, 3:55 a.m.