ChrEpi: Sample MPRA data
In MPRAnalyze: Statistical Analysis of MPRA data

Description Usage Format Source

A subset of MPRA data from Inoue et al., comparing enhancer activity of episomal constructs vs. chromosomally integrated constructs (integration was performed with a lentivirus). Data included negative control enhancers, multiple batches and barcodes, a subsample of which are included in this sample data for runtime purposes.

data(ChrEpi)

ce.colAnnot

ce.dnaCounts

ce.rnaCounts

ce.control

ce.colAnnot

Column annotations for each column (sample) in the data matrices

batch: batch identifier, factor
condition: condition identifier, factor. WT corresponds to chromosomal and MT corresponds to episomal
barcode: barcode identifier, factor

ce.dnaCounts