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MPRAnalyze is an analysis framework designed for data generated by Massively Parallel Reporter Assays (MPRAs). MPRAnlayze can be used for quantification of enhancer-induced transcription rates, calssification of active\inactive enhancers, and comparative analyses of enhancer activity between conditions.
MPRAnalyze will soon be released via bioconductor, and could be installed using the BiocManager package:
BiocManager::install("MPRAnalyze")
Until then, MPRAnalyze can be installed directly from the Yosef lab github, using the devtools install_github function:
library(devtools)
install_github("YosefLab/MPRAnalyze")
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