YosefLab/MPRAnalyze: Statistical Analysis of MPRA data
MPRAnalyze provides statistical framework for the analysis of data generated by Massively Parallel Reporter Assays (MPRAs), used to directly measure enhancer activity. MPRAnalyze can be used for quantification of enhancer activity, classification of active enhancers and comparative analyses of enhancer activity between conditions. MPRAnalyze construct a nested pair of generalized linear models (GLMs) to relate the DNA and RNA observations, easily adjustable to various experimental designs and conditions, and provides a set of rigorous statistical testig schemes.
Getting started
Browse package contents
Package details |
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| Author | Tal Ashuach [aut, cre], David S Fischer [aut], Anat Kriemer [ctb], Fabian J Theis [ctb], Nir Yosef [ctb], |
| Bioconductor views | CellBasedAssays CellBiology Classification DifferentialExpression ExperimentalDesign GeneExpression ImmunoOncology Sequencing Software StatisticalMethod |
| Maintainer | Tal Ashuach <tal_ashuach@berkeley.edu> |
| License | GPL-3 |
| Version | 1.9.1 |
| URL | https://github.com/YosefLab/MPRAnalyze |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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