ChrEpi: Sample MPRA data

In YosefLab/MPRAnalyze: Statistical Analysis of MPRA data

Description

A subset of MPRA data from Inoue et al., comparing enhancer activity of episomal constructs vs. chromosomally integrated constructs (integration was performed with a lentivirus). Data included negative control enhancers, multiple batches and barcodes, a subsample of which are included in this sample data for runtime purposes.

Usage

data(ChrEpi)

ce.colAnnot

ce.dnaCounts

ce.rnaCounts

ce.control

Format

ce.colAnnot

Column annotations for each column (sample) in the data matrices

batch

batch identifier, factor

condition

condition identifier, factor. WT corresponds to chromosomal and MT corresponds to episomal

barcode

barcode identifier, factor

ce.dnaCounts

DNA observations

ce.rnaCounts

DNA observations

ce.control

indices of control enhancers

An object of class data.frame with 40 rows and 3 columns.

An object of class matrix with 110 rows and 40 columns.

An object of class matrix with 110 rows and 40 columns.

An object of class logical of length 110.

Source

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5204343/

YosefLab/MPRAnalyze documentation built on Nov. 14, 2020, 2:35 a.m.