API for YosefLab/MPRAnalyze
Statistical Analysis of MPRA data

Global functions
ChrEpi Man page
MpraObject Man page
MpraObject,SummarizedExperiment-method Man page
MpraObject,matrix-method Man page
analyzeComparative Man page Source code
analyzeComparative.scale Source code
analyzeQuantification Man page Source code
autoChooseModel Source code
ce.colAnnot Man page
ce.control Man page
ce.dnaCounts Man page
ce.rnaCounts Man page
checkForIntercept Source code
compute.depth Source code
controls Man page
controls,MpraObject-method Man page
cost.dna Source code
cost.dnarna Source code
cost.rna Source code
cost.rna.scale Source code
dnaAnnot Man page
dnaAnnot,MpraObject-method Man page
dnaCounts Man page
dnaCounts,MpraObject-method Man page
dnaDepth Man page
dnaDepth,MpraObject-method Man page
est.mode Source code
estimateDepthFactors Man page Source code
estimateFactors Source code
extractModelParameters_DNA Man page
extractModelParameters_RNA Man page
extractProp Source code
fit.dnarna.noctrlobs Source code
fit.dnarna.noctrlobs.scale Source code
fit.dnarna.onlyctrl.iter Source code
get.ll.functions Source code
getAlpha Man page Source code
getDesignMat Source code
getDistrParam_DNA Man page Source code
getDistrParam_RNA Man page Source code
getFits_DNA Man page Source code
getFits_RNA Man page Source code
getModelParameters_DNA Man page Source code
getModelParameters_RNA Man page Source code
getSingleAlpha Source code
isNestedDesign Source code
ll.dna.gamma.pois Source code
ll.dna.ln Source code
ll.rna.gamma.pois Source code
ll.rna.ln.ln Source code
ll.rna.ln.nb Source code
ll.rna.scale.nb Source code
model Man page
model,MpraObject-method Man page
reformatModels Source code
reformatModels.scale Source code
rnaAnnot Man page
rnaAnnot,MpraObject-method Man page
rnaCounts Man page
rnaCounts,MpraObject-method Man page
rnaDepth Man page
rnaDepth,MpraObject-method Man page
rowAnnot Man page
rowAnnot,MpraObject-method Man page
setDepthFactors Man page Source code
setModel Man page Source code
simulateMPRA Man page Source code
testCoefficient Man page Source code
testEmpirical Man page Source code
testLrt Man page Source code
testLrt.scale Source code
validateMpraObject Source code
YosefLab/MPRAnalyze documentation built on Nov. 7, 2019, 10:32 a.m.