staRank: Stability Ranking

Detecting all relevant variables from a data set is challenging, especially when only few samples are available and data is noisy. Stability ranking provides improved variable rankings of increased robustness using resampling or subsampling.

Author
Juliane Siebourg, Niko Beerenwinkel
Date of publication
None
Maintainer
Juliane Siebourg <juliane.siebourg@bsse.ethz.ch>
License
GPL
Version
1.16.0

View on Bioconductor

Man pages

aggregRank
aggregRank
avrgRank-methods
Get average ranking
baseRank-methods
Get base ranking
dataFormatRSA
dataFormatRSA
getRankmatrix
getRankmatrix
getSampleScores-methods
Get Sample Scores
getStability
getStability
method-methods
Get method
mwTest2samp
mwTest2samp
Pi-methods
Get Pi
rankCor-methods
Get rank correlations
RankSummary-class
Class RankSummary
runRSA
runRSA
salmonellaInfection
RNAi screen of human cells during Salmonella infection
salmonellaStability
Example stability analysis on a subset of the Salmonella...
show-methods
Show function for a RankSummary object.
stabilityRanking-methods
Wrapper to perform stabilityRanking
stableSetSize-methods
Get stable set sizes
stabRank-methods
Get stability ranking
staRank-package
Stability ranking
summary-methods
Summary method for RankSummary object
summaryStats-methods
Summary statistic per element
uniqueRSARanking
uniqueRSARanking

Files in this package

staRank/DESCRIPTION
staRank/NAMESPACE
staRank/R
staRank/R/aggregRank.R
staRank/R/dataFormatRSA.R
staRank/R/getRankmatrix.R
staRank/R/getSampleScores.R
staRank/R/getStability.R
staRank/R/mwTest2samp.R
staRank/R/rankSummary.R
staRank/R/runRSA.R
staRank/R/staRank-package.R
staRank/R/stabilityRanking.R
staRank/R/summaryStats.R
staRank/R/uniqueRSARanking.R
staRank/build
staRank/build/vignette.rds
staRank/data
staRank/data/salmonellaInfection.RData
staRank/data/salmonellaStability.RData
staRank/inst
staRank/inst/doc
staRank/inst/doc/staRank.R
staRank/inst/doc/staRank.Rnw
staRank/inst/doc/staRank.pdf
staRank/inst/example
staRank/inst/example/staRank-example.R
staRank/man
staRank/man/Pi-methods.Rd
staRank/man/RankSummary-class.Rd
staRank/man/aggregRank.Rd
staRank/man/avrgRank-methods.Rd
staRank/man/baseRank-methods.Rd
staRank/man/dataFormatRSA.Rd
staRank/man/getRankmatrix.Rd
staRank/man/getSampleScores-methods.Rd
staRank/man/getStability.Rd
staRank/man/method-methods.Rd
staRank/man/mwTest2samp.Rd
staRank/man/rankCor-methods.Rd
staRank/man/runRSA.Rd
staRank/man/salmonellaInfection.Rd
staRank/man/salmonellaStability.Rd
staRank/man/show-methods.Rd
staRank/man/staRank-package.Rd
staRank/man/stabRank-methods.Rd
staRank/man/stabilityRanking-methods.Rd
staRank/man/stableSetSize-methods.Rd
staRank/man/summary-methods.Rd
staRank/man/summaryStats-methods.Rd
staRank/man/uniqueRSARanking.Rd
staRank/test
staRank/test/test.R
staRank/vignettes
staRank/vignettes/staRank.Rnw