salmonellaInfection: RNAi screen of human cells during Salmonella infection
In staRank: Stability Ranking
Description
The package contains an RNAi screen on human cells under
Salmonella infection. Briefly, in HeLa cells all genes
were knocked-down individually by RNA interference.
Subsequently cells were infected with Salmonella. The
cells were imaged with a microscope and from the images
several features were extracted (for details see original
paper (Misselwitz2011)). This dataset contains normalized
infection ratios. These are computed as the logarithm of
the fraction of infected cells per knock-down.
Subsequently they are z-scored per plate. Duplicated
genes were removed and also genes containing NA values.
Format
a numeric matrix of 6860 genes (rows) with 3 siRNA values each
(columns).
References
Misselwitz B. et al. (2011) RNAi screen of
Salmonella invasion shows role of COPI in membrane
targeting of cholesterol and Cdc42. Molecular Systems
Biology.
staRank documentation built on Nov. 8, 2020, 7:51 p.m.
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Description
The package contains an RNAi screen on human cells under Salmonella infection. Briefly, in HeLa cells all genes were knocked-down individually by RNA interference. Subsequently cells were infected with Salmonella. The cells were imaged with a microscope and from the images several features were extracted (for details see original paper (Misselwitz2011)). This dataset contains normalized infection ratios. These are computed as the logarithm of the fraction of infected cells per knock-down. Subsequently they are z-scored per plate. Duplicated genes were removed and also genes containing NA values.
Format
a numeric matrix of 6860 genes (rows) with 3 siRNA values each (columns).
References
Misselwitz B. et al. (2011) RNAi screen of Salmonella invasion shows role of COPI in membrane targeting of cholesterol and Cdc42. Molecular Systems Biology.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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