spicyR: Spatial analysis of in situ cytometry data

spicyR provides a series of functions to aid in the analysis of both immunofluorescence and mass cytometry imaging data as well as other assays that can deeply phenotype individual cells and their spatial location.

Package details

AuthorNicolas Canete [aut], Ellis Patrick [aut, cre]
Bioconductor views CellBasedAssays SingleCell
MaintainerEllis Patrick <ellis.patrick@sydney.edu.au>
LicenseGPL (>=2)
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))


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spicyR documentation built on March 17, 2021, 6:01 p.m.