signifPlot: Plots result of signifPlot.

In spicyR: Spatial analysis of in situ cytometry data

Description

Plots result of signifPlot.

Usage

signifPlot(
  results,
  fdr = FALSE,
  breaks = c(-5, 5, 0.5),
  colors = c("blue", "white", "red"),
  marksToPlot = NULL
)

Arguments

results	Data frame obtained from spicy.
fdr	TRUE if FDR correction is used.
breaks	Vector of 3 numbers giving breaks used in pheatmap. The first number is the minimum, the second is the maximum, the third is the number of breaks.
colors	Vector of colours to use in pheatmap.
marksToPlot	Vector of marks to include in pheatmap.

Value

a pheatmap object

Examples

data(spicyTest)
signifPlot(spicyTest, breaks=c(-3, 3, 0.5))

spicyR documentation built on March 17, 2021, 6:01 p.m.