phenoDist: Phenotypic distance measures

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PhenoDist is designed for measuring phenotypic distance in image-based high-throughput screening, in order to identify strong phenotypes and to group treatments into functional clusters.

Author
Xian Zhang, Gregoire Pau, Wolfgang Huber, Michael Boutros
Date of publication
None
Maintainer
Xian Zhang <xianzhang@gmail.com>
License
LGPL-2.1
Version
1.22.0
URLs

View on Bioconductor

Man pages

clusterDist
clusterDist
ctlSeparatn
Calculate control separation
distToNeg
distToNeg
enrichAnalysis
enrichAnalysis
PDMByFactorAnalysis
Calculate phenotypic distance matrix by factor analysis
PDMByKS
Compute phenotypic distance matrix by Kolmogorov-Smirnov...
PDMBySvmAccuracy
Compute phenotypic distance matrix by SVM classification...
PDMBySvmWeightVector
Compute phenotypic distance matrix by SVM weight vector
PDMByWellAvg
Compute phenotypic distance matrix with well features
repCorr
repCorr
repDistRank
repDistRank

Files in this package

phenoDist/CHANGES
phenoDist/DESCRIPTION
phenoDist/NAMESPACE
phenoDist/R
phenoDist/R/PDMatrix.R
phenoDist/R/clusterAnalysis.R
phenoDist/R/phenotypeIdentification.R
phenoDist/R/qualityControl.R
phenoDist/R/tools.R
phenoDist/build
phenoDist/build/vignette.rds
phenoDist/inst
phenoDist/inst/CITATION
phenoDist/inst/doc
phenoDist/inst/doc/phenoDist.R
phenoDist/inst/doc/phenoDist.Rnw
phenoDist/inst/doc/phenoDist.pdf
phenoDist/inst/kimorph
phenoDist/inst/kimorph/kimorph.rda
phenoDist/inst/kimorph/selectedFtrs.rda
phenoDist/inst/kimorph/svmAccPDM_Pl1.rda
phenoDist/man
phenoDist/man/PDMByFactorAnalysis.Rd
phenoDist/man/PDMByKS.Rd
phenoDist/man/PDMBySvmAccuracy.Rd
phenoDist/man/PDMBySvmWeightVector.Rd
phenoDist/man/PDMByWellAvg.Rd
phenoDist/man/clusterDist.Rd
phenoDist/man/ctlSeparatn.Rd
phenoDist/man/distToNeg.Rd
phenoDist/man/enrichAnalysis.Rd
phenoDist/man/repCorr.Rd
phenoDist/man/repDistRank.Rd
phenoDist/vignettes
phenoDist/vignettes/phenoDist.Rnw
phenoDist/vignettes/phenoDist.bib