anthony-aylward/exploreatacseq: Exploratory Analysis of ATAC-seq data

`exploreatacseq` provides methods for exploratory analysis of multiple ATAC-seq datasets, which might represent multiple cell types or treatment conditions. The primary function is `explore()`, which takes as input a set of BAM files containing data from bulk or single-cell ATAC-seq experiments, along with some metadata for each file. Each ATAC-seq dataset is pre-processed and normalized, and then a principal component analysis is performed. The output of `explore()` is a table of PC coordinates for each input file along with a customizable PCA plot.

Getting started

Package details

Bioconductor views ATACSeq CellBiology DimensionReduction Epigenetics PrincipalComponent SingleCell
LicenseMIT + file LICENSE
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
anthony-aylward/exploreatacseq documentation built on May 10, 2021, 8:45 a.m.