`exploreatacseq` provides methods for exploratory analysis of multiple ATAC-seq datasets, which might represent multiple cell types or treatment conditions. The primary function is `explore()`, which takes as input a set of BAM files containing data from bulk or single-cell ATAC-seq experiments, along with some metadata for each file. Each ATAC-seq dataset is pre-processed and normalized, and then a principal component analysis is performed. The output of `explore()` is a table of PC coordinates for each input file along with a customizable PCA plot.
|Bioconductor views||ATACSeq CellBiology DimensionReduction Epigenetics PrincipalComponent SingleCell|
|License||MIT + file LICENSE|
|Package repository||View on GitHub|
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