transform_counts: apply transformations to read counts
In anthony-aylward/exploreatacseq: Exploratory Analysis of ATAC-seq data
Description
Usage
Arguments
Value
Description
apply voom to input read counts (DGEList) and remove batch
effects
Usage
1
transform_counts(count_dgelist, batch = NULL, covariates = NULL)
Arguments
count_dgelist
DGEList representing read counts
batch
factor or vector indicating batches
covariates
matrix or vector of numeric covariates
Value
numeric matrix representing transformed counts
anthony-aylward/exploreatacseq documentation built on May 10, 2021, 8:45 a.m.
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Description Usage Arguments Value
Description
apply voom to input read counts (DGEList) and remove batch effects
Usage
1 | transform_counts(count_dgelist, batch = NULL, covariates = NULL)
|
Arguments
count_dgelist |
DGEList representing read counts |
batch |
factor or vector indicating batches |
covariates |
matrix or vector of numeric covariates |
Value
numeric matrix representing transformed counts
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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