preprocess: preprocess ATAC-seq data

In anthony-aylward/exploreatacseq: Exploratory Analysis of ATAC-seq data

Description

preprocess multiple ATAC-seq datasets into a read count matrix

Usage

preprocess(input_data, n_peaks = 1e+05, cores = 1)

Arguments

input_data	list contatining data details or character path to a JSON file
n_peaks	integer, number of the top most variable peaks to include in the analysis
cores	integer, max number of cores to use

Value

list giving the median peak length and the matrix of read counts

anthony-aylward/exploreatacseq documentation built on May 10, 2021, 8:45 a.m.